View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_27 (Length: 202)
Name: NF19805_low_27
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 49202432 - 49202264
Alignment:
| Q |
19 |
ctttaatattggatgaatgttttcaatatttagtgttggctataatataactatactactgaatcactttttcggtgattaaaactctggatggtgtagg |
118 |
Q |
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| T |
49202432 |
ctttaatattggatgaatgttttcaatatttagcgttggctataatataactatactactgaatcactttttcggtgattcaaactctggatggtgtagg |
49202333 |
T |
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| Q |
119 |
tacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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| T |
49202332 |
tacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
49202264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 49187418 - 49187284
Alignment:
| Q |
50 |
agtgttggctataatataactatactactgaatcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaa |
149 |
Q |
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| T |
49187418 |
agtgttggctattatataactatact---gtattacttttttggtgattaaaactttggatggtgtaggtacaagaagcaaactgggagctgtacaagaa |
49187322 |
T |
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| Q |
150 |
gcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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| T |
49187321 |
acagaaagagactgaagcaattctgtatgagaagaagg |
49187284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 49191087 - 49190975
Alignment:
| Q |
75 |
tactgaatcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctg |
174 |
Q |
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| T |
49191087 |
tactggatcacttttttggtgattgaaattctggatggtataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctg |
49190988 |
T |
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| Q |
175 |
tatgagaagaagg |
187 |
Q |
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||||||||||||| |
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| T |
49190987 |
tatgagaagaagg |
49190975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 49207312 - 49207219
Alignment:
| Q |
94 |
tgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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| T |
49207312 |
tgattgaaattctggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgagaagaagg |
49207219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 49211876 - 49211793
Alignment:
| Q |
104 |
tctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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| T |
49211876 |
tctggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgagaagaagg |
49211793 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 37030530 - 37030430
Alignment:
| Q |
87 |
ttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaag |
186 |
Q |
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|||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
37030530 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
37030431 |
T |
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| Q |
187 |
g |
187 |
Q |
| |
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| |
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| T |
37030430 |
g |
37030430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 32593229 - 32593310
Alignment:
| Q |
106 |
tggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
| |
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|||||||| ||||||||||| || |||||||| | |||||||| || ||||| | ||||||||||||||||||||||||| |
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| T |
32593229 |
tggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaagg |
32593310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 31527163 - 31527091
Alignment:
| Q |
115 |
taggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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||||||||||| || |||||||| | |||| ||| || ||||| || ||||||||||||||||||||||||| |
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| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaagg |
31527091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 51824064 - 51823981
Alignment:
| Q |
104 |
tctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaagg |
187 |
Q |
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|||| ||||| || |||||||| || |||||||| | |||||||| || ||||| || |||||||||||||| |||||||||| |
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| T |
51824064 |
tctgaatggtttatgtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgagaagaagg |
51823981 |
T |
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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 26756367 - 26756263
Alignment:
| Q |
82 |
tcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgaga |
181 |
Q |
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||||| ||| ||||||| ||| ||||||| ||| ||| |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
26756367 |
tcactattttggtgattcaaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgaga |
26756268 |
T |
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| Q |
182 |
agaag |
186 |
Q |
| |
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||||| |
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| T |
26756267 |
agaag |
26756263 |
T |
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