View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_3 (Length: 682)
Name: NF19805_low_3
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Original strand, 42911331 - 42911832
Alignment:
| Q |
15 |
atgaacggatggaagagaaattgagttgcattgctgtaaagcctacggctgcaagtggaaggattgaccaatacacacacaaactccaaagctgtgtgag |
114 |
Q |
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| T |
42911331 |
atgaacggatggaagagaaattgcgttacattgctgtaaagcctacggctgcaagtggaaggattgaccaatacacacacaaactccaaagctgtgtgag |
42911430 |
T |
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| Q |
115 |
attctctcctctactctaccactttgtttttggaagtcacaattcggtggggaccaaaacattgccagtgttttggcttttacttcttggacctttcatg |
214 |
Q |
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| T |
42911431 |
attctc--ctctactctaccactttgtttttggaagtcacaattcggtggggaccaaa-cattgccagtgttttggcttttacttcttggacctttcatg |
42911527 |
T |
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| Q |
215 |
accatctcttattccattgacattcttcaaattattgtctccctcctcaacgcatttaattcttccgccaaaccctcgtacttaccaca-tttttaatcc |
313 |
Q |
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| T |
42911528 |
accatctcttattccattgacattcttcaaattattgtctccctcctcaacgcatttaattcttccgccaaaccctcgtacttaccacattttttaatcc |
42911627 |
T |
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| Q |
314 |
tttcctcttagtagcagtacattggatatttaacttctatgttcatccacgttccacaaaactcttttttattcattaacaattgtaagttgtttcgtgt |
413 |
Q |
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| T |
42911628 |
tttcctcttagtagcagtacattggatatttaacttctatgttcatccacgttccacaaaactcttcttaattcattaacaattgtgagttgtttcgtgt |
42911727 |
T |
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| Q |
414 |
cgattactcatgcatgtggtcctactgcacacacatgtttagcttcgtagcttcaattactacgttattctatattggaaatatatttgctagaaactag |
513 |
Q |
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| T |
42911728 |
cgattaatcatgcatgtggtcctactgcacacac--gtttaacttcgtagcatcaattattacgttattcaatattggaaatatatttgctagaaactag |
42911825 |
T |
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| Q |
514 |
aaatata |
520 |
Q |
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| T |
42911826 |
aaatata |
42911832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 514 - 663
Target Start/End: Original strand, 42911865 - 42912011
Alignment:
| Q |
514 |
aaatatataaagaattaagttgagtgtcttattctgtttgattgcataataaaacccaaaggcatgaagataggataggacataggagtcaaatacatgg |
613 |
Q |
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| T |
42911865 |
aaatatataaagaattaagttgagtgtcttattctgtttgattgcataataaaacccaaaggcatgaagataggataggacataggagtcaaatacatgg |
42911964 |
T |
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| Q |
614 |
cgacacaagtaataatatatagtgttactgtaaatgtaaatagaactcac |
663 |
Q |
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| T |
42911965 |
cgacacaag---taatatttagtgttactgtcaatgtaaatggaactcac |
42912011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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