View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19805_low_4 (Length: 648)
Name: NF19805_low_4
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 30877850 - 30877218
Alignment:
| Q |
1 |
tatggaaatggaaggttatgatatatttggagatgctactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877850 |
tatggaaatggaaggttatgatatatttggagatgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggt |
30877751 |
T |
|
| Q |
101 |
tcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877750 |
tcaagtttctctctggttttggatagggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttg |
30877651 |
T |
|
| Q |
201 |
aagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877650 |
aagctttgaagaatcatagtgaggcagaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggt |
30877551 |
T |
|
| Q |
301 |
tagttcaacataatgcttttacatcttcctttctttaatcattgagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggt |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877550 |
tagttcaacataatgcttttacatcatcctttctttaatcattcagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggt |
30877451 |
T |
|
| Q |
401 |
aagtacttatcacattaatgcttaattattttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaatctaactagtgat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30877450 |
aagtacttatcacattaatgcttaattattttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaagctaactagtgat |
30877351 |
T |
|
| Q |
501 |
gtttagtgggctctcccctcctaacccaagtttttcctttacacaaggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877350 |
gtttagtgggctctcccctcctaacccaagtttttcctttacacatggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgc |
30877251 |
T |
|
| Q |
601 |
ttatgtataactatttctataacagaaggaaat |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30877250 |
ttatgtataactatttctataacagaaggaaat |
30877218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 80 - 308
Target Start/End: Complemental strand, 39332933 - 39332708
Alignment:
| Q |
80 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
179 |
Q |
| |
|
|||| ||||| ||| ||||||||| || || |||||||| ||||| || | ||| |||||||| |||||| |||| ||| ||||| |||||||||| | |
|
|
| T |
39332933 |
gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat |
39332834 |
T |
|
| Q |
180 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
279 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| ||||||||||||| |||||| |||| |
|
|
| T |
39332833 |
cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgt |
39332737 |
T |
|
| Q |
280 |
cattccaggtgctttgaaggttagttcaa |
308 |
Q |
| |
|
|||||||| ||| ||||||||||||| |
|
|
| T |
39332736 |
tattccaggggctaataaggttagttcaa |
39332708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
| Q |
80 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
179 |
Q |
| |
|
|||| ||||| ||| ||||||||| || || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| |||||||||||| |
|
|
| T |
30203705 |
gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt |
30203606 |
T |
|
| Q |
180 |
ccactacagagagaagtgttgaagctttgaagaatcat |
217 |
Q |
| |
|
| || ||||||||| |||||||||||||||||||| |
|
|
| T |
30203605 |
cacct---gagagaagtattgaagctttgaagaatcat |
30203571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 627
Target Start/End: Original strand, 37053519 - 37053560
Alignment:
| Q |
587 |
tatcatataaatgcttatgtata-actatttctataacagaa |
627 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
37053519 |
tatcatataagtgcttatgtatagactatttctataacagaa |
37053560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 280
Target Start/End: Complemental strand, 12102677 - 12102483
Alignment:
| Q |
80 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
179 |
Q |
| |
|
|||| ||||||||| ||||||||| || || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| |||||||||||| |
|
|
| T |
12102677 |
gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt |
12102578 |
T |
|
| Q |
180 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
279 |
Q |
| |
|
| || | ||||||| | ||||||||||||||||||||||| || || |||||||||||| || |||||| |||||||||||| |||||| |||| |
|
|
| T |
12102577 |
cacct---gggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgt |
12102484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
| Q |
88 |
aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca |
187 |
Q |
| |
|
|||||| ||||||||| || || |||||||||||||| || | ||| ||||||| |||||| |||| ||| | ||| |||||||||| ||| | |
|
|
| T |
17146603 |
aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct |
17146509 |
T |
|
| Q |
188 |
gagagaagtgttgaagctttgaagaatcatagtga |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 628
Target Start/End: Original strand, 29269821 - 29269863
Alignment:
| Q |
587 |
tatcatataaatgcttatgtat-aactatttctataacagaag |
628 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29269821 |
tatcatataaatgcttgtgtataaactatttctataacagaag |
29269863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 624
Target Start/End: Complemental strand, 37063217 - 37063181
Alignment:
| Q |
589 |
tcatataaatgcttatgtat-aactatttctataaca |
624 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37063217 |
tcatataaatgcttatgtataaactatttctataaca |
37063181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University