View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_6 (Length: 394)
Name: NF19805_low_6
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 8691111 - 8691487
Alignment:
| Q |
1 |
tgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691111 |
tgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
|
| Q |
101 |
acaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagnnnnnnntgttgattatcctccaaaattttgtagaggacttttgttttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691211 |
acaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagaaaaaaatgttgattatcctccaaaattttgtagaggacttttgttttg |
8691310 |
T |
|
| Q |
201 |
tgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcctagtcgacacatgagttccgatcacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691311 |
tgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcctagtcgacacatgagttccgatcacg |
8691410 |
T |
|
| Q |
301 |
aaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaac |
377 |
Q |
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| T |
8691411 |
aaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaac |
8691487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 171 - 373
Target Start/End: Original strand, 8705944 - 8706145
Alignment:
| Q |
171 |
tccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaagggg |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| |
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| T |
8705944 |
tccaaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaagggg |
8706043 |
T |
|
| Q |
271 |
agcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattt |
370 |
Q |
| |
|
|||| ||| ||||||||||||| || || |||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
8706044 |
agccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttgataaatga-tatagaaattt |
8706142 |
T |
|
| Q |
371 |
tga |
373 |
Q |
| |
|
||| |
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|
| T |
8706143 |
tga |
8706145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 353
Target Start/End: Original strand, 8744567 - 8744745
Alignment:
| Q |
175 |
aaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcc |
274 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||| ||||||| | |
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| T |
8744567 |
aaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaatactgaagaggaattggatacaatgatatgtgatgtaggggagtc |
8744666 |
T |
|
| Q |
275 |
tagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgata |
353 |
Q |
| |
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||| |||||||||| || | ||||||||||||||||| | ||||||||| | ||||||| | ||||| ||||||| |
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| T |
8744667 |
aagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttgata |
8744745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 8723260 - 8723378
Alignment:
| Q |
159 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatat |
258 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||||| |||||| | |
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| T |
8723260 |
tgttgattacgctccaaaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgt |
8723359 |
T |
|
| Q |
259 |
gtgatgaaggggagcctag |
277 |
Q |
| |
|
||||||||||||||||||| |
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| T |
8723360 |
gtgatgaaggggagcctag |
8723378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 353
Target Start/End: Original strand, 8724711 - 8724904
Alignment:
| Q |
159 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatat |
258 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| | |||||||| | |||| |||||||| |
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| T |
8724711 |
tgttgattatcatccaaa-ttttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatgatat |
8724809 |
T |
|
| Q |
259 |
gtgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgata |
353 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||| | ||||||| |||||||||| | |||||||| | |||||||| | ||||| ||||||| |
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|
| T |
8724810 |
gtgacgaaggggagtcgagtagacacatgagttcttactacgaaaaccaagaaacagctcaaggaatttcagatgtaagcagttcatccttgata |
8724904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 8705401 - 8705491
Alignment:
| Q |
11 |
aatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||| | ||| || |||||||||||||||||| |
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| T |
8705401 |
aatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaa |
8705491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 14372330 - 14372237
Alignment:
| Q |
7 |
ctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||||||||||||||| | |||||||| | ||| ||||||||||||||||||||| |
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| T |
14372330 |
ctataatggtcgtgttcctggtgttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaa |
14372237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 14372018 - 14371953
Alignment:
| Q |
162 |
tgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaa |
227 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14372018 |
tgattatcatccgaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaa |
14371953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 8739912 - 8740023
Alignment:
| Q |
161 |
ttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgt |
260 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||| |||||| || || || |||||||||| ||||||||||| | ||| |||| | ||| |
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| T |
8739912 |
ttgattaccctccaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagaggaaaattatacaatggtgtgt |
8740011 |
T |
|
| Q |
261 |
gatgaaggggag |
272 |
Q |
| |
|
|||||||||||| |
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|
| T |
8740012 |
gatgaaggggag |
8740023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 8740485 - 8740563
Alignment:
| Q |
19 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgtt |
97 |
Q |
| |
|
||||||||||||||| | || ||| | ||||||||||||||| ||||| |||| ||||| |||||||||||| |||| |
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|
| T |
8740485 |
tgttcctggtgttaagactaattggatcattcatgaatatcatgatgccatctttgatgatcaccaggtttgttatgtt |
8740563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 8723844 - 8723944
Alignment:
| Q |
19 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaactttta |
118 |
Q |
| |
|
||||||||||||||| | ||| ||| | |||||||| |||||| || |||||| | ||| ||||||||||||||||||| || |||| |||||||| |
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| T |
8723844 |
tgttcctggtgttaagaccaattggatcattcatgagtatcatgatgtcaccttagaggattcccaggtttgttttgttacattaaggttttaactttta |
8723943 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
8723944 |
a |
8723944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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