View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_9 (Length: 390)
Name: NF19805_low_9
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 3001442 - 3001804
Alignment:
| Q |
11 |
ttattctctagctactactaatggtgtaataacaaaatcggttatgatgggatagaggttgagct--gatttcagctaatgcttacaaggagtacagcct |
108 |
Q |
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| T |
3001442 |
ttattctctagctactactaatggtgtaataacaaaatcggttatgatgagatagaggttgagcatcgatttcagctaatgcttacaaggagtacagcct |
3001541 |
T |
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| Q |
109 |
tggtctcacttgtttgtttttgtttttaggtttaaaagattgacatgtcggaatgaagtagcaatctcagctaacgattacaaattctactctccaagac |
208 |
Q |
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| T |
3001542 |
tggtctcacttgtttgtttttgtttttaggtttaaaagattgatatgtcggaatgaagtagcaatctcagctaacgattacaaattctactctccaagac |
3001641 |
T |
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| Q |
209 |
acaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggtgttgcctcattttggaaaatgaagtgc |
308 |
Q |
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| T |
3001642 |
acaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggtgttgcctcattttggaaaatgaagtgc |
3001741 |
T |
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| Q |
309 |
tgtttttaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgcc |
371 |
Q |
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| T |
3001742 |
tgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgcc |
3001804 |
T |
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Back To:
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Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 182 - 367
Target Start/End: Original strand, 32706817 - 32707002
Alignment:
| Q |
182 |
acgattacaaattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggt |
281 |
Q |
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| T |
32706817 |
acgattacaaattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccagatatccctttaagcatggt |
32706916 |
T |
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| Q |
282 |
gttgcctcattttggaaaatgaagtgctgtttttaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706917 |
gttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgt |
32707002 |
T |
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