View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_high_6 (Length: 376)
Name: NF19806_high_6
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 68 - 349
Target Start/End: Original strand, 1276060 - 1276329
Alignment:
| Q |
68 |
aatactcatctagatttgaattcattcatagattttcgcgttacaagaatttctccaaagattttcctttaaattaatatcatctcagaagatgcgtgtt |
167 |
Q |
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| T |
1276060 |
aatactcatctacatttgaattcattcatagattttcgcgttacaag------------gattttcctttaaattaatatcatctcagaagatgcgtgtt |
1276147 |
T |
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| Q |
168 |
ttcaataattttcagttgcaaaatatacaatgtaacgtacaaactgcagcccttctctcaacaacctttggaagacaaaatccctgcccttcgattcgaa |
267 |
Q |
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| T |
1276148 |
ttcaataattttcagtcgcaaaatatacaatgtaacatacaaactgcagcccttctctgaacaacctttggaagacaaaatccctgcccttcgattcgaa |
1276247 |
T |
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| Q |
268 |
caattaccattgaaatcaaatcactatcacgtattcaagatcaagcagtatcatttgagaataattttgttcatgatggtat |
349 |
Q |
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| T |
1276248 |
caattaccattgaaattaaatcactatcacgtattcaagatcaagcagtatcatttgagaataattttgttgatgatggtat |
1276329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 11086263 - 11086359
Alignment:
| Q |
165 |
gttttcaataattttcagttgcaaaatataca-atgtaacgtacaaactgcagcccttctctcaacaacctttggaagacaaaatccctgcccttcg |
260 |
Q |
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| T |
11086263 |
gttttcaatagttttcagtcgcaaaatatacagatgtaacatacaaactgcagcccttctctcaacaacctttggaagacaaaatccccgcccttcg |
11086359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 11086404 - 11086463
Alignment:
| Q |
265 |
gaacaattaccattgaaatcaaatcactatc-acgtattcaagatcaagcagtatcattt |
323 |
Q |
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| T |
11086404 |
gaacaattaccattgaaagcataccactacccacggattcaagatcaagcagtatcattt |
11086463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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