View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_low_10 (Length: 251)
Name: NF19806_low_10
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_low_10 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 1088210 - 1087966
Alignment:
| Q |
7 |
gtgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaa |
106 |
Q |
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| T |
1088210 |
gtgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaa |
1088111 |
T |
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| Q |
107 |
accatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgt |
206 |
Q |
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| T |
1088110 |
accatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgt |
1088011 |
T |
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| Q |
207 |
catattagcatcaacccaagtatgtgatgtatccggcaatttcaa |
251 |
Q |
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| T |
1088010 |
catatttgcatcaacccaagtatgtgatgtatctggcaatttcaa |
1087966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 1047735 - 1047492
Alignment:
| Q |
8 |
tgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaa |
107 |
Q |
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| T |
1047735 |
tgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaa |
1047636 |
T |
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| Q |
108 |
ccatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
207 |
Q |
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| T |
1047635 |
ccatatagaacaaccactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtc |
1047536 |
T |
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| Q |
208 |
atattagcatcaacccaagtatgtgatgtatccggcaatttcaa |
251 |
Q |
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| T |
1047535 |
atattagcatcaacccaagtatgtgttgtatctggcaatttcaa |
1047492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 1072545 - 1072305
Alignment:
| Q |
8 |
tgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaa |
107 |
Q |
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| T |
1072545 |
tgagaagaatatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaa |
1072446 |
T |
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| Q |
108 |
ccatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
207 |
Q |
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| T |
1072445 |
ccatatggaacatccactaccat---cactcacatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
1072349 |
T |
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| Q |
208 |
atattagcatcaacccaagtatgtgatgtatccggcaatttcaa |
251 |
Q |
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| T |
1072348 |
atattagcatcaacccaagtatgtgttgtatctggcaatttcaa |
1072305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 1104748 - 1104519
Alignment:
| Q |
22 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaac |
121 |
Q |
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| T |
1104748 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
1104649 |
T |
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| Q |
122 |
cactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaac |
221 |
Q |
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| T |
1104648 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
1104549 |
T |
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| Q |
222 |
ccaagtatgtgatgtatccggcaatttcaa |
251 |
Q |
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| T |
1104548 |
ccaagcatgtgttgtttctggcaatttcaa |
1104519 |
T |
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