View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_low_2 (Length: 636)
Name: NF19806_low_2
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 43935285 - 43935721
Alignment:
| Q |
1 |
aatgttcgcctgaactcataacctatttagttttggattaatcaagtattgggaggctcaggaaccacataaaaccctaacaagggattgatatataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43935285 |
aatgttcgcctgaactcataacatatttagttttggatcaatcaattattgggaggctcaggaaccacataaaaccctaacaagggattgatat--aaaa |
43935382 |
T |
|
| Q |
101 |
ggagaacaacatctatggtaaggatgttgaattcaccttttcttctaaacaaaacaaataaagtgctaagaaacatgtgacagagcaagacaacgagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43935383 |
ggagaacaacatctatggtaaggatgttgaattcactttttcttctaaacaaaacaaataaagtgctaagaaacatgtgacagagcaagacaacgagtct |
43935482 |
T |
|
| Q |
201 |
atgctgatccccaagcctatcacctttcatttgcaatatcttataaaatttatccaataatacgaaaagataaaagtagatacaaatttgagcggactag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
43935483 |
atgctgatccccaagcctatcacctttcatttgcaatatcttataaaatttatccaataatacgaaaagataaaagaagatacaaatttgagcggattag |
43935582 |
T |
|
| Q |
301 |
accaaaacccaacataaac-----ttctctccttaattataannnnnnnagaggaaataatttacnnnnnnnaaaggagagaaaataattataaattgtt |
395 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43935583 |
accaaaacccaacataaactaattttctctccttaattataatttttttagaggaaataatttactttttttaaaggagagaaaataattataaattgtt |
43935682 |
T |
|
| Q |
396 |
gggatacacttctaatttgtggtaaaaactcaagtgaat |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
43935683 |
gggatacacttctaatttgtggtaaaaactcaagtgaat |
43935721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 430 - 619
Target Start/End: Original strand, 43935740 - 43935929
Alignment:
| Q |
430 |
tgaatggagaaagatgtgtacaagtgttctctatgtcaatctatatatctacaaatgcaataaccaatatttatagagatggttatgctaactaattatg |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
43935740 |
tgaatggagaaagatgtgtacaagtgttctctatgtcaatctatatatctacaaatgcaataaccaatatttatagaaatggttatgctaactaattatg |
43935839 |
T |
|
| Q |
530 |
gttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaacttctagctggtaactaa |
619 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43935840 |
gttacttgactgtcaagtaaacgctatgattaagttaatctttaactatttatctcaatcttatccaactaacttctagctggtaactaa |
43935929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 39998478 - 39998418
Alignment:
| Q |
511 |
gttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctc |
571 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||| ||||||| |||||||||| |
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|
| T |
39998478 |
gttatgctaactaattatgattacttaactaacaagtaaaccatatgattgagttaatctc |
39998418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 487 - 576
Target Start/End: Original strand, 31254529 - 31254617
Alignment:
| Q |
487 |
caataaccaatatttatagagatggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaact |
576 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||| || |||||||||||||||| |
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|
| T |
31254529 |
caataacca-tatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaact |
31254617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 607
Target Start/End: Original strand, 40739930 - 40740007
Alignment:
| Q |
526 |
tatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaacttcta |
607 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||| |
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|
| T |
40739930 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaa----ttaactcaatcttatcaaactaacttcta |
40740007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 576
Target Start/End: Original strand, 4208315 - 4208382
Alignment:
| Q |
509 |
tggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaact |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| |
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|
| T |
4208315 |
tggttatgctaactaattatggttacttgactagcaagtaaatcctatgaccatgttaatctctaact |
4208382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 608
Target Start/End: Complemental strand, 23509350 - 23509254
Alignment:
| Q |
511 |
gttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatt---tatctcaatcttatccaactaacttcta |
607 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| | || ||||||||||||||||||||||||| |
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|
| T |
23509350 |
gttatactaactaactatggttactta----tcaagtaaaccttatgatcaagttaatctctaactaataactaactcaatcttatccaactaacttcta |
23509255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 577
Target Start/End: Original strand, 42629299 - 42629363
Alignment:
| Q |
513 |
tatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaacta |
577 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||| || |||||||||||||| |
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|
| T |
42629299 |
tatgctaactaaatatggttacttgactaacaagtaaacctaatgatcaaattaatctctaacta |
42629363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 508 - 619
Target Start/End: Original strand, 8849914 - 8850025
Alignment:
| Q |
508 |
atggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaacttcta |
607 |
Q |
| |
|
|||||||| | ||||||| |||||| |||||| |||||||||| |||||| |||||||||| ||||| || |||||||||||||||||||||| || |
|
|
| T |
8849914 |
atggttattccaactaatggtggttaattgactatcaagtaaaccatatgatcaagttaatcttaaactaactaactcaatcttatccaactaactttta |
8850013 |
T |
|
| Q |
608 |
gctggtaactaa |
619 |
Q |
| |
|
||| |||||||| |
|
|
| T |
8850014 |
gctagtaactaa |
8850025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 577
Target Start/End: Complemental strand, 17070743 - 17070650
Alignment:
| Q |
483 |
aatgcaataaccaatatttatagagatggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaacta |
577 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||| || |||| |||||||||| |||||| |
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|
| T |
17070743 |
aatgcaataacca-tatatatagagatgattatgctaacttactatggttacttgactcacaagtaaaccctttgataaagttaatctataacta |
17070650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 577
Target Start/End: Original strand, 17577529 - 17577622
Alignment:
| Q |
483 |
aatgcaataaccaatatttatagagatggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaacta |
577 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||| || |||| |||||||||| |||||| |
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|
| T |
17577529 |
aatgcaataacca-tatatatagagatgattatgctaacttactatggttacttgactcacaagtaaaccctttgataaagttaatctataacta |
17577622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 518 - 577
Target Start/End: Original strand, 23398061 - 23398120
Alignment:
| Q |
518 |
taactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaacta |
577 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||| |
|
|
| T |
23398061 |
taactaattatggttacttgactaacaagtaaactctatgatcaagtaagtctctaacta |
23398120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 604
Target Start/End: Complemental strand, 38163195 - 38163088
Alignment:
| Q |
501 |
tatagagatggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaa----ctatttatctcaatcttatcca |
596 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||| ||||| ||| || |||||||||||||| |
|
|
| T |
38163195 |
tatagagtgggttatgctaactaactatggttacttgactaccaagtaaaccctatgatcaagttaatttctaattaactaactaactcaatcttatcca |
38163096 |
T |
|
| Q |
597 |
actaactt |
604 |
Q |
| |
|
|||||||| |
|
|
| T |
38163095 |
actaactt |
38163088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 574
Target Start/End: Complemental strand, 34015977 - 34015914
Alignment:
| Q |
511 |
gttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaa |
574 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
34015977 |
gttatgataactaactatggttacttgactgacaagtaaactctatgatcaagttaatctctaa |
34015914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 606
Target Start/End: Original strand, 22311067 - 22311161
Alignment:
| Q |
512 |
ttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaacttct |
606 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||||| |||||| |||||||| ||||| | || ||||||||||| ||||||||||| |
|
|
| T |
22311067 |
ttatgctaactaactatggttactcgactatcaagtaaactttatgatcaagttaatatctaatcaactaactcaatcttattaaactaacttct |
22311161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 576
Target Start/End: Complemental strand, 34880682 - 34880593
Alignment:
| Q |
483 |
aatgcaataaccaatatttatagagatggttatgctaactaattatggttacttgactgtcaagtaaacgc-tatgattaagttaatctctaact |
576 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||||||| | |||||| |||||||||||||||| |
|
|
| T |
34880682 |
aatgcaataacca-tatatatagagatggttatgccaac----tatggttatttgactagcaagtaaacccttatgatcaagttaatctctaact |
34880593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 29661868 - 29661951
Alignment:
| Q |
524 |
attatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaacttcta |
607 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||| |||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
29661868 |
attatggttaattgactaacaagtaaactctatgatcaagttaatctctaactgactaaatcaatcttagtcaactaacttcta |
29661951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 603
Target Start/End: Complemental strand, 17283712 - 17283619
Alignment:
| Q |
510 |
ggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctctaactatttatctcaatcttatccaactaact |
603 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||||| | | | || |||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
17283712 |
ggttatgttaactacctatgattacttgactttcaagtaaactatgtaactatgttaatctctgactgactaactcaatcttatccaactaact |
17283619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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