View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_low_3 (Length: 613)
Name: NF19806_low_3
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Original strand, 7076003 - 7076575
Alignment:
| Q |
18 |
tctgtgaatatgaatatgctccagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattgtat |
117 |
Q |
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||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7076003 |
tctgtcaatataaatatgctcgagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattgtat |
7076102 |
T |
|
| Q |
118 |
atttgacccttatttatttagnnnnnnnnnc--cgtatgattttttaatatacatgtgcaagtttaaattgtttcactgttgttttggtaagagtgatat |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7076103 |
atttgacccttatttatttagttttttttttttcgtatgattttttaatatacatgtacaagtttaaattgtttcactgttgttttggtaagagtgatat |
7076202 |
T |
|
| Q |
216 |
tataaacgaggaaattaaccttctaataaggagattacatcaagtaaccaattgacacaaatgttaccccttttgtgaaaaggtctttttcaataatcac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || || |
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| T |
7076203 |
tataaacgaggaaattaaccttctaataaggagattacatcaagtaaccaattggcacaaatgttaccccttttgtgaaaaggccttt-------attac |
7076295 |
T |
|
| Q |
316 |
tattcactttggtaatgagttgagtttttcaatacacaatcttcatattccaattagcagtac--nnnnnnnnnaaacataactgatgtaagtttttgca |
413 |
Q |
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| T |
7076296 |
taatcactttggtaatgagttgagtttttcaatacacaatcttcatattccaattagcagtacttttttttttaaaacataactgatgtaagtttttgca |
7076395 |
T |
|
| Q |
414 |
gtgatgaagtagagcttagatgaagtttcattatcttactgcttgattattgatgttgtcatgttgcaatttgggccgccgtggtttctgacgacgcttt |
513 |
Q |
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| T |
7076396 |
gtgatgaagtagagcttagatgaagtttcattatcttactacttgattattg--------atgttgcaatttgggccgccgtggtttctgacgacgcttt |
7076487 |
T |
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| Q |
514 |
ggatttttcactttttagcacaattgttggataagatattaaaaccactggcatgcactttccagctctatcaagtgatcattcttct |
601 |
Q |
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| T |
7076488 |
ggatttttcactttttagcacaattgttggataagatattaaaaccactggcatgcactttccagctctatcaagtgatcattcttct |
7076575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 150 - 362
Target Start/End: Original strand, 43460969 - 43461174
Alignment:
| Q |
150 |
gtatgattttttaatatacatgtgcaagtttaaattgtttcactgttgttttggtaagagtgatattataaacgaggaaattaaccttctaataaggaga |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
43460969 |
gtatgattttttaatatacatgtgcaagtttaaattgtttcactgttgttttgctaagagtgatattataaaagaggaaattaaccttctaataagatga |
43461068 |
T |
|
| Q |
250 |
ttacatcaagtaaccaattgacacaaatgttaccccttttgtgaaaaggtctttttcaataatcactattcactttggtaatgagttgagtttttcaata |
349 |
Q |
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| T |
43461069 |
ttacatcaagtaatcaattggcacaaatattaccccttttgtgaaaaggcctttttcaataa-------tcactttggtaatgagttgagtttttcagta |
43461161 |
T |
|
| Q |
350 |
cacaatcttcata |
362 |
Q |
| |
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||||||||||||| |
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| T |
43461162 |
cacaatcttcata |
43461174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 43459338 - 43459451
Alignment:
| Q |
24 |
aatatgaatatgctccagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattgtatatttga |
123 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43459338 |
aatatgaatatgctccggtatactatggcaaacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattgtatatttga |
43459437 |
T |
|
| Q |
124 |
cccttatttattta |
137 |
Q |
| |
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|||||||||||||| |
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| T |
43459438 |
cccttatttattta |
43459451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 388 - 545
Target Start/End: Original strand, 43461245 - 43461394
Alignment:
| Q |
388 |
aaacataactgatgtaagtttttgcagtgatgaagtagagcttagatgaagtttcattatcttactgcttgattattgatgttgtcatgttgcaatttgg |
487 |
Q |
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| T |
43461245 |
aaacataactgatgtaagtttatgcagtgatgaagtagagcttagatgaactttcattatcttactacttgattattg--------atgttgcaatttgg |
43461336 |
T |
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| Q |
488 |
gccgccgtggtttctgacgacgctttggatttttcactttttagcacaattgttggat |
545 |
Q |
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| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
43461337 |
gatgctgtggtttctgacgacgcttgggatttttcactttttagcacaactgttggat |
43461394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 44530028 - 44529958
Alignment:
| Q |
43 |
atactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt |
113 |
Q |
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| T |
44530028 |
atactatagcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt |
44529958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 53762145 - 53762215
Alignment:
| Q |
43 |
atactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt |
113 |
Q |
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| T |
53762145 |
atactatggcagactagatgtcattctaattttaatttagcaactactatggaagatttgatatataaatt |
53762215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 53762100 - 53762157
Alignment:
| Q |
42 |
tatactatggcagacttgatgtaattctaattttaatttag-caactactatggcaga |
98 |
Q |
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| T |
53762100 |
tatactatggcagacttgatgtaattctggtttttattcagccaaatactatggcaga |
53762157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 40292533 - 40292462
Alignment:
| Q |
474 |
atgttgcaatttgggccgccgtggtttctgacgacgctttggatttttcactttttagcacaattgttggat |
545 |
Q |
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| T |
40292533 |
atgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggat |
40292462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 40266757 - 40266717
Alignment:
| Q |
162 |
aatatacatgtgcaagtttaaattgtttcactgttgttttg |
202 |
Q |
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||||| |||||||||||||||||||||| | |||||||||| |
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| T |
40266757 |
aatatgcatgtgcaagtttaaattgttttaatgttgttttg |
40266717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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