View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_low_4 (Length: 543)
Name: NF19806_low_4
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 296 - 526
Target Start/End: Original strand, 17196414 - 17196644
Alignment:
| Q |
296 |
ccctaaccggcaagagagagaaggccaaacgaggttatgattagcgagccaatcataaagaacaggaacaagagatttccattgagagtacttctcatca |
395 |
Q |
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| T |
17196414 |
ccctaaccggcaagagagagaaggccaaacgaggttatgattagcaagccaatcataaagaacaggaacaagagatttccattgagagtacttctcatca |
17196513 |
T |
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| Q |
396 |
acagaagcttgttgttgctgctgctgatgaagctgttgctgttgcttttccttcttcgattctctcggtgtcttcacttgtgatggttcttctctcttgt |
495 |
Q |
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| T |
17196514 |
acagaagcttgttgttgctgctgctgatgaagctgttgctgttgcttttccttcttcgattctctcggtgacttcacttgtgatggttcttctctcttgt |
17196613 |
T |
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| Q |
496 |
cttccttgggtttaggtttgcgtcctcttgt |
526 |
Q |
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| T |
17196614 |
cttccttgggtttaggtttgcgtcctcttgt |
17196644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 17196181 - 17196235
Alignment:
| Q |
62 |
tattctaccataaaccataattccatccaactcattaaacatcattacaacatta |
116 |
Q |
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| T |
17196181 |
tattctaccataaaccataattccatccaactcattaaacatcattacaacatta |
17196235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 17196059 - 17196103
Alignment:
| Q |
73 |
aaaccataattccatccaactcattaaacatcattacaacattat |
117 |
Q |
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| T |
17196059 |
aaaccataattcaatccaacccatcaaacataattacaacattat |
17196103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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