View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19806_low_8 (Length: 323)
Name: NF19806_low_8
Description: NF19806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19806_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 42558975 - 42559281
Alignment:
| Q |
1 |
ttaaggtaagcctagtcattgaaaaatgcttgaataacacatttaaatgttttgatacctgtttcaatcgtacaagagatagtgttgcatcatgaggaaa |
100 |
Q |
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| T |
42558975 |
ttaaggtaagcctagtcattgaaaaatgcttgaataacacatttaaatgttttgatacctgtttcaatcgtacaagagatagtgttgcatcatgaggaaa |
42559074 |
T |
|
| Q |
101 |
tagaaggtgggtgttaacaataagaatttcctgcctaatttcaccgtttcgccattttgaaaatggaaagactagttcaacatgtaacagttgagctaca |
200 |
Q |
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| T |
42559075 |
tagaaggtgggtgttaacaataagaatttcctgcctaatttcaccgtttcgccattttgaaaatggaaagactagttcaacatgtaacagttgagctaca |
42559174 |
T |
|
| Q |
201 |
cgatcaccaatatcgttgaagtgcaactccttataattgaaaatgttaaagtattccgtttgcactgctattaaaagacctgttatataacccaaggata |
300 |
Q |
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| T |
42559175 |
cgatcaccaatatcgttgaagtgcaactccttataattgaaaatgttaaagtattccgtttgcactgctattaaaagacctgttatataacccaaggata |
42559274 |
T |
|
| Q |
301 |
acactat |
307 |
Q |
| |
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||||||| |
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| T |
42559275 |
acactat |
42559281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 29158919 - 29158726
Alignment:
| Q |
89 |
atcatgaggaaatagaaggtgggtgttaacaataagaatttcctgcctaatttcaccgtttcgccattttgaaaatggaaagactagttcaacatgtaac |
188 |
Q |
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| T |
29158919 |
atcatgtggaaatagtaggtgagtattgacaatgagaacttcttgcctaataccactgttttggcactgtgaaagtggaaatgctaactcaacatgcaac |
29158820 |
T |
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| Q |
189 |
agttgagctacacgatcaccaatatcgttgaagtgcaactccttataattga-aaatgttaaagtattccgtttgcactgctattaaaagacctg |
282 |
Q |
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| T |
29158819 |
aattgagctactctatcaccacaatcattgaaatgcaactccttataattaacaactgtgaaa-tattccttttgtactgctatcagaagacctg |
29158726 |
T |
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