View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19807_low_1 (Length: 357)

Name: NF19807_low_1
Description: NF19807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19807_low_1
NF19807_low_1
[»] chr8 (5 HSPs)
chr8 (23-344)||(15151082-15151416)
chr8 (23-156)||(19442366-19442499)
chr8 (23-156)||(19578517-19578650)
chr8 (50-157)||(16821972-16822079)
chr8 (101-157)||(26738332-26738388)
[»] chr2 (7 HSPs)
chr2 (12-158)||(17673395-17673541)
chr2 (12-158)||(17628324-17628470)
chr2 (27-154)||(1644587-1644714)
chr2 (26-154)||(19569559-19569687)
chr2 (41-157)||(37081337-37081453)
chr2 (89-158)||(24578611-24578680)
chr2 (26-113)||(3563566-3563653)
[»] chr1 (4 HSPs)
chr1 (26-158)||(28538479-28538611)
chr1 (27-163)||(2900379-2900512)
chr1 (50-154)||(23971060-23971164)
chr1 (24-158)||(27908274-27908408)
[»] chr4 (4 HSPs)
chr4 (23-155)||(6136078-6136210)
chr4 (24-156)||(17405141-17405273)
chr4 (42-154)||(2946637-2946749)
chr4 (111-158)||(14134009-14134056)
[»] chr3 (2 HSPs)
chr3 (23-158)||(9021772-9021907)
chr3 (56-108)||(25226627-25226679)
[»] chr6 (3 HSPs)
chr6 (42-158)||(27991531-27991647)
chr6 (66-158)||(13627803-13627895)
chr6 (183-218)||(27991667-27991702)
[»] chr5 (5 HSPs)
chr5 (28-156)||(15023568-15023696)
chr5 (41-133)||(21714317-21714409)
chr5 (98-158)||(2808440-2808500)
chr5 (41-133)||(21788231-21788323)
chr5 (34-124)||(13502447-13502537)
[»] chr7 (3 HSPs)
chr7 (41-147)||(4633993-4634099)
chr7 (50-154)||(32238918-32239022)
chr7 (99-153)||(29676952-29677006)
[»] scaffold0010 (1 HSPs)
scaffold0010 (56-108)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 344
Target Start/End: Complemental strand, 15151416 - 15151082
Alignment:
Q  23 ctggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 122  Q
    |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15151416 ctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 15151317  T
Q  123 tccgttcatttctcttaattttatcattttttgtgggattannnnnnnnnnnnacagagcaccactctcttgatttgctcaagacatccaaattcataag 222  Q
    | ||||||||||| |||||||||||||||||||||||||||            ||||||||||||||||||||||||  |||||||||||||||||||||    
T  15151316 ttcgttcatttctgttaattttatcattttttgtgggatta---tttttttttacagagcaccactctcttgatttgtccaagacatccaaattcataag 15151220  T
Q  223 accgaccctgattacttcatta----------------taattgcatcatgagatcataataagtttcaacaatttcataaaaccaacaccaatgctacc 306  Q
    | ||||||||||||||||||||                |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15151219 atcgaccctgattacttcattataattgcattatgatttaattgcatcatgaaatcataataagtttcaacaatttcataaaaccaacaccaatgctacc 15151120  T
Q  307 ttgatcttcattgtgtctacaaaatttaacagattttg 344  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15151119 ttgatcttcattgtatctacaaaatttaacagattttg 15151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 19442499 - 19442366
Alignment:
Q  23 ctggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 122  Q
    ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||||||||| | | ||| ||| ||||||||||||||||||||| ||    
T  19442499 ctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgttcatatcgcacaatatcaaatgaaatgtttaatagtatt 19442400  T
Q  123 tccgttcatttctcttaattttatcattttttgt 156  Q
    | | ||||||||||||||| ||||||||||||||    
T  19442399 ttcattcatttctcttaatcttatcattttttgt 19442366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 19578650 - 19578517
Alignment:
Q  23 ctggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 122  Q
    ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||||||||| | | ||| ||| ||||||||||||||||||||| ||    
T  19578650 ctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgttcatatcgcacaatatcaaatgaaatgtttaatagtatt 19578551  T
Q  123 tccgttcatttctcttaattttatcattttttgt 156  Q
    | | ||||||||||||||| ||||||||||||||    
T  19578550 ttcattcatttctcttaatcttatcattttttgt 19578517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 16822079 - 16821972
Alignment:
Q  50 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 149  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||  | |||||||||||||| ||||||     
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttttagatcatttctcttaatcttatcaa 16821980  T
Q  150 tttttgtg 157  Q
    ||||||||    
T  16821979 tttttgtg 16821972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 26738332 - 26738388
Alignment:
Q  101 aaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 157  Q
    ||||||||||| | ||||||||| | ||||||||||||| | |||| ||||||||||    
T  26738332 aaatgaaatgtatgatagtcttttcattcatttctcttattcttataattttttgtg 26738388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 17673395 - 17673541
Alignment:
Q  12 aagcataggcactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 111  Q
    |||||||| | || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || ||||||||||||||||| || ||||||||||||||    
T  17673395 aagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgt 17673494  T
Q  112 ttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    || ||||||||||| ||||||||||||||| ||||||||||||||||    
T  17673495 ttcatagtctttccattcatttctcttaatcttatcattttttgtgg 17673541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 17628324 - 17628470
Alignment:
Q  12 aagcataggcactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 111  Q
    |||||||| | || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || ||||||||||||||||| || ||||||||||||||    
T  17628324 aagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgt 17628423  T
Q  112 ttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    || ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  17628424 ttcatagtctttccattcgtttctcttaatcttatcattttttgtgg 17628470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 1644714 - 1644587
Alignment:
Q  27 aacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccg 126  Q
    |||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||||| |||||||||||||||||||||||||||||||     
T  1644714 aacatggatcctagcttagagctaatttgttcacatttcaaagattcatacctatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttcca 1644615  T
Q  127 ttcatttctcttaattttatcatttttt 154  Q
    || |||||||||||| ||||||||||||    
T  1644614 tttatttctcttaatcttatcatttttt 1644587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 19569687 - 19569559
Alignment:
Q  26 gaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 125  Q
    ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  19569687 gaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 19569588  T
Q  126 gttcatttctcttaattttatcatttttt 154  Q
     ||||||| ||||||| ||||||||||||    
T  19569587 attcatttatcttaatcttatcatttttt 19569559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 37081337 - 37081453
Alignment:
Q  41 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaa 140  Q
    |||||||| |||  |||||||||| ||||||| |||||||||||||||||||| ||| | |||| |||||||| |||||||||||||||||||||||||     
T  37081337 cttagagctaatcggttcacatttcaaagattcatacttgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcatttctcttat 37081436  T
Q  141 ttttatcattttttgtg 157  Q
    | ||||||| |||||||    
T  37081437 tcttatcatgttttgtg 37081453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 24578680 - 24578611
Alignment:
Q  89 ttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    ||||| ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  24578680 ttgcacaatgtcaaatgaagtgtttaatagtattttcattcatttctcttaattttatcattttttgtgg 24578611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 3563653 - 3563566
Alignment:
Q  26 gaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgttt 113  Q
    ||||||||||||| ||||||||| |||| ||| | |||| ||||||| ||||||||| |||||||| | |||||| ||||||||||||    
T  3563653 gaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtgctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 28538611 - 28538479
Alignment:
Q  26 gaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 125  Q
    ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||| ||| |||||||    
T  28538611 gaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttcttctagcacaatgtcaaatgaaatgtttcataatctttcc 28538512  T
Q  126 gttcatttctcttaattttatcattttttgtgg 158  Q
     ||||||||||||||| ||||||||||||||||    
T  28538511 attcatttctcttaatcttatcattttttgtgg 28538479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 2900512 - 2900379
Alignment:
Q  27 aacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccg 126  Q
    |||||||||||| ||||||||| |||| |||  ||||| ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||     
T  2900512 aacatggatcctagcttagagctaattggttgtcatttcaaagatttatacttgtgttctt---gcacaatgtcaaatgaaatgtttaatagtctttcca 2900416  T
Q  127 ttcatttctcttaattttatcattttttgtgggatta 163  Q
    ||||||||||||||| || ||||||| ||||| ||||    
T  2900415 ttcatttctcttaatcttgtcattttctgtggaatta 2900379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 23971060 - 23971164
Alignment:
Q  50 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 149  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcatttctcttaatcttatcat 23971159  T
Q  150 ttttt 154  Q
    |||||    
T  23971160 ttttt 23971164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 27908408 - 27908274
Alignment:
Q  24 tggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 123  Q
    ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||||||||||| ||||| ||||| ||||||||| |||| || |||||    
T  27908408 tggaacatggatcctagcttagagctaattggttcacatttcaaatattcatacttgtgttcttgttgcacaatgtgaaatgaaatatttattaatcttt 27908309  T
Q  124 ccgttcatttctcttaattttatcattttttgtgg 158  Q
    || ||||||| ||||||| |||| |||||||||||    
T  27908308 ccattcatttttcttaatcttataattttttgtgg 27908274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 6136210 - 6136078
Alignment:
Q  23 ctggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 122  Q
    |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  6136210 ctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgtttaatagtctt 6136111  T
Q  123 tccgttcatttctcttaattttatcattttttg 155  Q
    ||| |||||||||||| || |||||||||||||    
T  6136110 tccattcatttctcttgatcttatcattttttg 6136078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 17405141 - 17405273
Alignment:
Q  24 tggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 123  Q
    |||||||||||||||  |||||||| |||| ||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||     
T  17405141 tggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtcttc 17405240  T
Q  124 ccgttcatttctcttaattttatcattttttgt 156  Q
     | ||||||| ||||||| ||||||||||||||    
T  17405241 tcattcatttatcttaatcttatcattttttgt 17405273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 2946749 - 2946637
Alignment:
Q  42 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaat 141  Q
    ||||||| |||| | || ||||| ||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  2946749 ttagagctaattggctcgcatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcatttctcttaat 2946650  T
Q  142 tttatcatttttt 154  Q
     ||||||||||||    
T  2946649 cttatcatttttt 2946637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 14134056 - 14134009
Alignment:
Q  111 tttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14134056 tttaatagtttttccgttcatttctcttaatcttatcattttttgtgg 14134009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 9021772 - 9021907
Alignment:
Q  23 ctggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctt 122  Q
    |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  9021772 ctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttt 9021871  T
Q  123 tccgttcatttctcttaattttatcattttttgtgg 158  Q
     || ||||||||| |||||  |||||||||||||||    
T  9021872 ccctttcatttcttttaatcgtatcattttttgtgg 9021907  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  56 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 108  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 27991531 - 27991647
Alignment:
Q  42 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaat 141  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcatttcccttaat 27991630  T
Q  142 tttatcattttttgtgg 158  Q
     ||||||||||||||||    
T  27991631 cttatcattttttgtgg 27991647  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 13627895 - 13627803
Alignment:
Q  66 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||| ||||||||||||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttcacttcttttaatcttatcattttttgtgg 13627803  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 27991667 - 27991702
Alignment:
Q  183 accactctcttgatttgctcaagacatccaaattca 218  Q
    |||||||||||||||||| |||||||||||||||||    
T  27991667 accactctcttgatttgcccaagacatccaaattca 27991702  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 15023568 - 15023696
Alignment:
Q  28 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 127  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  128 tcatttctcttaattttatcattttttgt 156  Q
    |||| ||||||||| ||||||||||||||    
T  15023668 tcatatctcttaatcttatcattttttgt 15023696  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 21714409 - 21714317
Alignment:
Q  41 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcattt 133  Q
    ||||| || |||| |||||||||| ||| ||| ||||||||||||||| |||| ||| ||||||||||| ||||||||||||||  |||||||    
T  21714409 cttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttcgattcattt 21714317  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 2808500 - 2808440
Alignment:
Q  98 gtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 158  Q
    |||||||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  2808500 gtcaaatgaaatatttaatagtttttccgttaatttctcttactcttatcattttttgtgg 2808440  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 21788323 - 21788231
Alignment:
Q  41 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcattt 133  Q
    ||||| || |||| |||||||||| ||| ||| ||||||||||||||| |||| ||| ||||||||||| ||||||||| ||||  |||||||    
T  21788323 cttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttcgattcattt 21788231  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 13502447 - 13502537
Alignment:
Q  34 atcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 124  Q
    ||||| |||||| || ||||  ||||||||| ||| ||| |||||||||||||||||||| ||| || ||| |||| |||||||| |||||    
T  13502447 atcctagcttagggctaattgattcacatttcaaatattcatacttgtgttcttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 4633993 - 4634099
Alignment:
Q  41 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaa 140  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcatttcttttaa 4634092  T
Q  141 ttttatc 147  Q
    |||||||    
T  4634093 ttttatc 4634099  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 32238918 - 32239022
Alignment:
Q  50 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 149  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||  |||||||| ||||||| |||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttttggttcatttttcttaatcttatcat 32239017  T
Q  150 ttttt 154  Q
    |||||    
T  32239018 ttttt 32239022  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 29676952 - 29677006
Alignment:
Q  99 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttt 153  Q
    ||||||||||| |||||||||||||  | |||||||||||||| |||| ||||||    
T  29676952 tcaaatgaaatatttaatagtctttgagctcatttctcttaatcttataattttt 29677006  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  56 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 108  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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