View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19807_low_3 (Length: 280)
Name: NF19807_low_3
Description: NF19807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19807_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 40634443 - 40634709
Alignment:
| Q |
1 |
atcaaaggttttattactttgcatattaacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttct |
100 |
Q |
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| T |
40634443 |
atcaaaggttttattactttgcatattaacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttct |
40634542 |
T |
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| Q |
101 |
ggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgtt |
200 |
Q |
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| T |
40634543 |
ggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgtt |
40634642 |
T |
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| Q |
201 |
ttgattcattcaaaatcatgctaagtataatatagctcacactaagagctggccttcatgagaaatt |
267 |
Q |
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| T |
40634643 |
ttgattcattcaaaatcatgctaagtataatatagctcacactaagagctggccttcatgagaaatt |
40634709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 40646069 - 40646273
Alignment:
| Q |
27 |
taacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtcc |
126 |
Q |
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| T |
40646069 |
taacattttattgtacggtgtgaattcgtgcagcttgtgtcggtgaatattttaatggagaaattgaagtttctggtgatataaaatcatgtgatgattc |
40646168 |
T |
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| Q |
127 |
aatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaaatcatgctaagt |
226 |
Q |
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| T |
40646169 |
aatatacaaaggttataaagcagttttggattcaaaatccactgatgaaacattggtaagctattcatcttgttttgattcattctaaaacatgctgagt |
40646268 |
T |
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| Q |
227 |
ataat |
231 |
Q |
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| T |
40646269 |
ataat |
40646273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 4781217 - 4781083
Alignment:
| Q |
49 |
aaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggct |
148 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| | || || | ||||||||||| | ||| |||||||||||||| ||| | |
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| T |
4781217 |
aaatcttgcagcttgtgtcaatgaatatttttatggagaaattgatagccccggagaaaacaaatcatctgaggatcccatatacaaaggttacaagaat |
4781118 |
T |
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| Q |
149 |
gttttggattcaaaatccacagatgaaacattggt |
183 |
Q |
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| T |
4781117 |
gttttggattcaaaatccattgatgaaacactggt |
4781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 31134395 - 31134465
Alignment:
| Q |
141 |
ataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattc |
211 |
Q |
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| T |
31134395 |
ataagactgttttggattcaaagaccacagatgaaacctttgtaagctatcaatcttattttgtttcattc |
31134465 |
T |
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