View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19807_low_4 (Length: 267)

Name: NF19807_low_4
Description: NF19807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19807_low_4
NF19807_low_4
[»] chr3 (8 HSPs)
chr3 (113-265)||(23681846-23681998)
chr3 (113-265)||(24054083-24054235)
chr3 (113-253)||(23683092-23683233)
chr3 (113-253)||(24055329-24055470)
chr3 (15-88)||(23681704-23681777)
chr3 (15-88)||(24053941-24054014)
chr3 (16-113)||(23682931-23683026)
chr3 (16-113)||(24055168-24055263)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 23681846 - 23681998
Alignment:
Q  113 gcagtatctttttgtttccctctattttttctcttctcgcttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagtat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23681846 gcagtatctttttgtttccctctattttttctcttctcgcttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagtat 23681945  T
Q  213 caattgcaaactttattatttgcagtgagatatttaattatagaataatttac 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  23681946 caattgcaaactttattatttgcagtgagatatttaattatagagtaaattac 23681998  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 24054083 - 24054235
Alignment:
Q  113 gcagtatctttttgtttccctctattttttctcttctcgcttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagtat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24054083 gcagtatctttttgtttccctctattttttctcttctcgcttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagtat 24054182  T
Q  213 caattgcaaactttattatttgcagtgagatatttaattatagaataatttac 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24054183 caattgcaaactttattatttgcagtgagatatttaattatagagtaaattac 24054235  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 23683092 - 23683233
Alignment:
Q  113 gcagtatctttttgtttccctctattttttctcttctcg-cttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagta 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  23683092 gcagtatctttttgtttccctctattttttctcttctcggcttcattagggcaggttaagtcatcagaacagtagctttgctgattcacttggtaaagta 23683191  T
Q  212 tcaattgcaaactttattatttgcagtgagatatttaattat 253  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  23683192 tcaatcgcaaactttattatttgcagtgaaatatttaattat 23683233  T

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Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 24055329 - 24055470
Alignment:
Q  113 gcagtatctttttgtttccctctattttttctcttctcg-cttcgttagggcatgttaagtcatcagaacagtagctttgctgattgacttagtaaagta 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  24055329 gcagtatctttttgtttccctctattttttctcttctcggcttcattagggcaggttaagtcatcagaacagtagctttgctgattcacttggtaaagta 24055428  T
Q  212 tcaattgcaaactttattatttgcagtgagatatttaattat 253  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  24055429 tcaatcgcaaactttattatttgcagtgaaatatttaattat 24055470  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 23681704 - 23681777
Alignment:
Q  15 aaaagggatagttaaacttatattccttttagttgcatttataagttctagttttctagttatgaaagttttaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23681704 aaaagggatagttaaacttatattccttttagttgcatttataagttctagttttctagttatgaaagttttaa 23681777  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 24053941 - 24054014
Alignment:
Q  15 aaaagggatagttaaacttatattccttttagttgcatttataagttctagttttctagttatgaaagttttaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24053941 aaaagggatagttaaacttatattccttttagttgcatttataagttctagttttctagttatgaaagttttaa 24054014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 23682931 - 23683026
Alignment:
Q  16 aaagggatagttaaactta-tattccttttagttgcatttataagttctagttttctagttatgaaagttttaaagttttaataattagttaaactttg 113  Q
    |||||| |||||| ||||| |||| | ||||||||| ||||||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||    
T  23682931 aaagggctagttacacttaatatttcgtttagttgcgtttataagttctaattttctagttatgaaagtttgaaagttt---taattagttaaactttg 23683026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 24055168 - 24055263
Alignment:
Q  16 aaagggatagttaaactta-tattccttttagttgcatttataagttctagttttctagttatgaaagttttaaagttttaataattagttaaactttg 113  Q
    |||||| |||||| ||||| |||| | ||||||||| ||||||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||    
T  24055168 aaagggctagttacacttaatatttcgtttagttgcgtttataagttctaattttctagttatgaaagtttgaaagttt---taattagttaaactttg 24055263  T

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