View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_high_1 (Length: 584)
Name: NF19808_high_1
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Complemental strand, 3640043 - 3639489
Alignment:
| Q |
18 |
agaatgctttgatttcttacttgtttgttttaattgcttgctttacaaatgacaagctttcacctatttataggctccaagagagagttctgcataaatt |
117 |
Q |
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| T |
3640043 |
agaatgctttgatttcttacttgtttgttttaattgcttgctttacaaacgacaagctttcacctatttataggctccaagagagagttctgcataaatt |
3639944 |
T |
|
| Q |
118 |
aggagataattctacacacttcaagagagagttatacatattatctacttacatttaatgccaagtctctcatttacttctagacctttctagaactttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639943 |
aggagataattctacacacttcaagagagagttatacatattatctacttacatttaatgccaagtctctcatttacttctagacctttctagaactttc |
3639844 |
T |
|
| Q |
218 |
tttggactacaaaagtcaaactaaaatggacctaacacttaattagttcaatggaccaaatgatatgaaaagtgaatacaagaattatgcttcacaatag |
317 |
Q |
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| T |
3639843 |
tttggactacaaaagtcaaactaaaatggacctaacacttaattagttcaatggaccaaatgatatgaaaagtgaatacaagaattatgcttcacaatag |
3639744 |
T |
|
| Q |
318 |
tcaactggggagaccctagcacaaagggaggaactttcccaccaccgaaagcactttgaaagtagatatcggaaacagacagtttttgtgctgtctgaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3639743 |
tcaactggggagaccctagcacaaagggaggaactttcccaccaccgaaagcactttgaaagtagatatcggaaac--acagtttttgtgctgtctgaag |
3639646 |
T |
|
| Q |
418 |
gtgtatttcagacaaaaacacgannnnnnnctctgtgcagatgtgtatttccggaatcctgtgcggnnnnnnnaggacctcagcctcctatgtagcctac |
517 |
Q |
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| T |
3639645 |
gtgtatttcagacaaaaacacgatttttttctctgtgcagatgtgtatttccggaatcctgtgcggtttttttaggacctcagcctcctatgtagcctac |
3639546 |
T |
|
| Q |
518 |
taattttatggtttcaccttcactgtgacgtccaacaaatttgtacatgatcctatg |
574 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
3639545 |
taattttatggtttcaccttcactgtgacatccaacaaatttgtacatgatcttatg |
3639489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 3648583 - 3648517
Alignment:
| Q |
273 |
ccaaatgatatgaaaagtgaatacaagaattatgcttcacaatagtcaactggggagaccctagcac |
339 |
Q |
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| T |
3648583 |
ccaaatgatatgaaaggtgattacaagaattaggcttcacaatattcaacagggtcaaccctagcac |
3648517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 4872395 - 4872449
Alignment:
| Q |
54 |
cttgctttacaaatgacaagctttcacctatttataggctccaagagagagttct |
108 |
Q |
| |
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|||| ||||||||||||||||| || ||| ||||||||||||||| ||||||||| |
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| T |
4872395 |
cttgatttacaaatgacaagctctcccctttttataggctccaagggagagttct |
4872449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 4892215 - 4892269
Alignment:
| Q |
54 |
cttgctttacaaatgacaagctttcacctatttataggctccaagagagagttct |
108 |
Q |
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|||| ||||||||||||||||| || ||| ||||||||||| ||| ||||||||| |
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| T |
4892215 |
cttgatttacaaatgacaagctctcccctttttataggctctaagggagagttct |
4892269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 32238646 - 32238589
Alignment:
| Q |
51 |
ttgcttgctttacaaatgacaagctttcacctatttataggctccaagagagagttct |
108 |
Q |
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||||||| ||||||||||||||||| || ||| ||||||||||||||| ||||||||| |
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| T |
32238646 |
ttgcttgatttacaaatgacaagctctcccctttttataggctccaagggagagttct |
32238589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 26947026 - 26947123
Alignment:
| Q |
51 |
ttgcttgctttacaaatgacaagctttcacctatttataggctccaagagagagttctgcataaattaggagataa--ttctacacacttcaagagag |
146 |
Q |
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||||||| ||||| ||||||||||| || ||| ||||||||||||||| ||||||||| | | || | | ||||| |||||||||||||||||||| |
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| T |
26947026 |
ttgcttgatttactaatgacaagctctcccctttttataggctccaagggagagttctagacacatcatgggataactttctacacacttcaagagag |
26947123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 43145913 - 43145841
Alignment:
| Q |
206 |
tctagaactttctttggactacaaaagtcaaactaaaatggacctaacacttaattagttcaatggaccaaat |
278 |
Q |
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| T |
43145913 |
tctagaactttctttggactacattacttaatccaaaatggatccaacacttgattaggccaatggaccaaat |
43145841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 12074311 - 12074254
Alignment:
| Q |
51 |
ttgcttgctttacaaatgacaagctttcacctatttataggctccaagagagagttct |
108 |
Q |
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||||||| ||||||||||||||||| || | | |||||||||| |||||||||||||| |
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| T |
12074311 |
ttgcttggtttacaaatgacaagctctcccatttttataggcttcaagagagagttct |
12074254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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