View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_high_18 (Length: 239)
Name: NF19808_high_18
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42492942 - 42492715
Alignment:
| Q |
1 |
tcaaataaaaaattaag-agtatttaactatgtttaatagaga-------ctagtggcggtgtaacagtttttgtagctgacggcactaatatatctttc |
92 |
Q |
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| T |
42492942 |
tcaaataaaaaattaaggagtatttaactatgtttaatagagagtagagactagtggcggtgtaacagtttttgtagctgacggcactaatatatctttc |
42492843 |
T |
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| Q |
93 |
tcatttgatgccagttccaaatttaattaagcatacaacattaaagaatgagattttactgtgttaggccacaagatcactccatgttgtattcaaatgt |
192 |
Q |
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| T |
42492842 |
tcatttgatgccagttccaaatttaattaagcatacaacattaaagaatgagattttactgtgttaggccacaagatcactccatgttgtattcaaatgt |
42492743 |
T |
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| Q |
193 |
atctaatatatctttctcatttgattcc |
220 |
Q |
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| T |
42492742 |
atctaatatatctttctcatttgattcc |
42492715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 42495107 - 42495007
Alignment:
| Q |
62 |
ttttgtagctgacggcactaatatatctttctcatttgatgccagttccaaatttaattaagcatacaacattaaagaatgagattttactgtgttaggc |
161 |
Q |
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| T |
42495107 |
ttttgtagctgacagtgctaatataccttcctcgtttgatgccagttccaaatgtaattaagcatacaacattaaagaatgagattttactgttttaggc |
42495008 |
T |
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| Q |
162 |
c |
162 |
Q |
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| T |
42495007 |
c |
42495007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 42492740 - 42492635
Alignment:
| Q |
79 |
ctaatatatctttctcatttgatgccagttccaaatttaattaagcatacaacattaaagaatgagattttactgtgttaggccacaagatcactccatg |
178 |
Q |
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||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||| || |
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| T |
42492740 |
ctaatatatctttctcatttgattccaattccaaatgaaattaagtatacaacattaaagaatgagattttactcttttaggctgcaagatcactccctg |
42492641 |
T |
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| Q |
179 |
ttgtat |
184 |
Q |
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||||| |
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| T |
42492640 |
ctgtat |
42492635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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