View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_high_5 (Length: 479)
Name: NF19808_high_5
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 34 - 464
Target Start/End: Complemental strand, 5478897 - 5478468
Alignment:
| Q |
34 |
atattacaaggacgcagaaactaaaatgtttcatttaaggtttcattttcttagagatcaagtgaacaaggatagtcagaacatgaaaattgcaagtatg |
133 |
Q |
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| T |
5478897 |
atattacaaggacgcggaaactaaaatgtttcatttaaggtttcattttcttagagatcaagtgaacaaggatggtcagaacatgaaaattgtaagtatg |
5478798 |
T |
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| Q |
134 |
agttgctattagaatactatttcccaatgagcgtcaactaaacgatggcgtctccagaaaatctacctttgtatcatatgttctatctttctcagaggag |
233 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5478797 |
agttgc-attagaatactatttcccaatgagcgtcaactatacgatggcgtctccagaaaatctacctttgtatcatatgatctatctttctcagaggag |
5478699 |
T |
|
| Q |
234 |
gtttaccgtggaatgataattcaactgctgaagttttctgattcatttgcaaataaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcga |
333 |
Q |
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| T |
5478698 |
gtttaccgtggaatgataattcaactgctgaagttttctgattcatttgcaaataaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcga |
5478599 |
T |
|
| Q |
334 |
gacactgtgatatgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaatcaagaatagattcagtgatacaagtagag |
433 |
Q |
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| T |
5478598 |
gacactgtgatctgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaatcaagaatagattctgtgaaacaagtagag |
5478499 |
T |
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| Q |
434 |
acattttcatggaatttgagaatatgatctt |
464 |
Q |
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| T |
5478498 |
acattttcagggaatttgagaatctgatctt |
5478468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 248 - 464
Target Start/End: Original strand, 31402413 - 31402631
Alignment:
| Q |
248 |
gataattcaactgctgaagttttctgattcatttgcaaata-aagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagacactgtg--at |
344 |
Q |
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|||||||||||| ||||| ||| ||||||| ||||||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||| || |
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| T |
31402413 |
gataattcaacttctgaattttgctgattcgtttgcaaatcgaagcccttcaccatggcgtatgtttaaaatcctcaacttgttcgagacactgtgtgat |
31402512 |
T |
|
| Q |
345 |
atgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaatcaagaatagattcagtgatacaagtagagacattttcatg |
444 |
Q |
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||| ||||||||||||||||||||||||| |||| ||||||| || ||||| ||||||||||||||||||| |||| | ||||| ||||||||||||| |
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| T |
31402513 |
ctgattcatgaatttgaatcattgtttcttgattcgttggtgaacg-aagcagtaaaaatcaagaatagattgggtgaaataagtaaagacattttcatg |
31402611 |
T |
|
| Q |
445 |
gaatttgagaatatgatctt |
464 |
Q |
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||||||| |||||||||||| |
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| T |
31402612 |
gaatttgggaatatgatctt |
31402631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 452
Target Start/End: Original strand, 31386466 - 31386608
Alignment:
| Q |
309 |
tgttcaaaatcctcaacttgttcgagacactgtg--atatgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaatca |
406 |
Q |
| |
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|||| ||||||||||||||||| ||||| |||| |||||| | |||| ||| ||| |||||| ||| |||||||||||| | ||||||||||||||| |
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| T |
31386466 |
tgtttaaaatcctcaacttgttaaagacaatgtgtgatatgagtgatgactttaaatgattgtt-cttgattccttggtgaatg-aagcaataaaaatca |
31386563 |
T |
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| Q |
407 |
agaatagattcagtgatacaagtagagacattttcatggaatttga |
452 |
Q |
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| T |
31386564 |
agaatagatgt-gtgaaataagtagagacattttcatggaatttga |
31386608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 31458994 - 31459075
Alignment:
| Q |
369 |
tttctttattccttggtgatcggaagcaataaaaatcaagaatagattcagtgatacaagtagagacattttcatggaatttga |
452 |
Q |
| |
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|||| |||||| ||||||| || ||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||||| |
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| T |
31458994 |
tttccttattcgttggtgaacg-aagcaataaaaatcaagaataga-tgggtgaaataagtaaagacattttcatggaatttga |
31459075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 306 - 464
Target Start/End: Complemental strand, 8406138 - 8405977
Alignment:
| Q |
306 |
gtatgttcaaaatcctcaacttgttcgagacactgtg--atatgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaa |
403 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||| |||| |||||| |||||||| |
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| T |
8406138 |
gtatgttcaaaattctcaacttgttcgagacactgtgtgatctgactcatgaatttgaatcattttttcttgattccttagtgaacggaagtaataaaaa |
8406039 |
T |
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| Q |
404 |
tc-aagaatagattcagtgatacaagtagagacattttcatggaatttgagaatatgatctt |
464 |
Q |
| |
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|| |||| ||| ||| |||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
8406038 |
tcaaagattagtttcggtgaaataagtagagacattttcatggaattcgagaatatgatctt |
8405977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 8040051 - 8040212
Alignment:
| Q |
249 |
ataattcaactgctgaagttttctgattcatttgcaaata-aagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagacac--tgtgata |
345 |
Q |
| |
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|||||||||||||||| ||| ||||||| ||||||||| |||| |||||| |||| |||||| |||||||| |||||||||||||||| ||||| |
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| T |
8040051 |
ataattcaactgctgatttttgctgattcgtttgcaaattgaagccattcagcctggtatatgtttaaaatccttaacttgttcgagacactgtgtgagc |
8040150 |
T |
|
| Q |
346 |
tgactcatgaatttgaatcattgtttctttattccttggtgatcggaagcaataaaaatcaag |
408 |
Q |
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||| ||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
8040151 |
tgattcatgaatttgaatcattgtttcttgattcattggaga-aggaagcaataaaaatcaag |
8040212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 9137081 - 9137171
Alignment:
| Q |
248 |
gataattcaactgctgaagttttctgattcatttgcaaat-aaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagaca |
337 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||| || | ||||||| ||| |||||| |||||||| ||||||||| |||| |
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|
| T |
9137081 |
gataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatccttgacttgttcgcgaca |
9137171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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