View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19808_high_9 (Length: 444)

Name: NF19808_high_9
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19808_high_9
NF19808_high_9
[»] chr2 (2 HSPs)
chr2 (11-283)||(9141910-9142187)
chr2 (280-429)||(9142244-9142393)
[»] chr4 (5 HSPs)
chr4 (206-277)||(36012506-36012577)
chr4 (288-368)||(50743708-50743787)
chr4 (177-253)||(50743812-50743887)
chr4 (296-368)||(55678896-55678967)
chr4 (301-358)||(36011353-36011411)
[»] chr8 (2 HSPs)
chr8 (282-358)||(3119303-3119379)
chr8 (194-264)||(3119147-3119219)
[»] chr3 (1 HSPs)
chr3 (179-264)||(32902224-32902311)
[»] chr1 (1 HSPs)
chr1 (288-368)||(33420817-33420896)
[»] chr7 (1 HSPs)
chr7 (95-138)||(19340822-19340864)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 9141910 - 9142187
Alignment:
Q  11 cacagatgcactcttcttctctggcat-----atgatcccttttctgannnnnnnnncactgttattagattttctctctcttgattgaatgtgaccaaa 105  Q
    ||||||||||||||||||| |||||||     ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  9141910 cacagatgcactcttcttcactggcatggcatatgatcccttttctgatttttttttcactgttattagattttctctctcttgattgaatgtgaccaaa 9142009  T
Q  106 tgcaatgtgtttggtcctgtgaccaactaagaacggcataaatagaacgcagaacacacaatcaaaatcatcatgaattgaaatgagggaaaaaacataa 205  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142010 tgcaatgtgtttggtcctgtgaccaaccaagaacagcataaatagaatgcagaacacacaatcaaaatcatcatgaattgaaatgagggaaaaaacataa 9142109  T
Q  206 atgaatcaagaacacaattttctaaccttccttatttcaaaattgctttcaaatcttgcaaacttgctgttatgtgga 283  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9142110 atgaatcaagaacacaattttctaaccttccttgtttcaaaattgctttcaaatcttgcaaacttgctgttatgtgga 9142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 280 - 429
Target Start/End: Original strand, 9142244 - 9142393
Alignment:
Q  280 tggaagaaga-gagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaactagaaagctn 378  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9142244 tggaagaagaagagagagattgcaaaggttttggatgaaattggaaattaaattttatttaagggtgtttttgtcatttatggttgtaactagaaagct- 9142342  T
Q  379 nnnnnntctcagtaaaagagcacgaaattggaagccagattaggaaatttc 429  Q
          |||| ||||||||||||||||||||||||||| ||||||||||||    
T  9142343 aaaaaatctcggtaaaagagcacgaaattggaagccagtttaggaaatttc 9142393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 36012577 - 36012506
Alignment:
Q  206 atgaatcaagaacacaattttctaaccttccttatttcaaaattgctttcaaatcttgcaaacttgctgtta 277  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  36012577 atgaatcaagaacccaattttctaaccttgcttgtttcaaaattgctttgaaatcttgcaaacttgctgtta 36012506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 50743787 - 50743708
Alignment:
Q  288 gagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 368  Q
    ||||||| ||| |||||| |||||| ||||||  ||| |||| ||||||||||||||||| ||||||||||||| ||||||    
T  50743787 gagagaacgatagcaaagattttgggtgaaatgagaattaaa-ttttatttaagggtgttattgtcatttatgggtgtaac 50743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 50743887 - 50743812
Alignment:
Q  177 catgaattgaaatgagggaaaaaacataaatgaatcaagaacacaattttctaaccttccttatttcaaaattgctt 253  Q
    |||||||||||||||||||||||| | |||  |||||| ||||||||||||||| |||  || ||||||||||||||    
T  50743887 catgaattgaaatgagggaaaaaaaaaaaacaaatcaa-aacacaattttctaatcttggttgtttcaaaattgctt 50743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 55678967 - 55678896
Alignment:
Q  296 gattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 368  Q
    |||||||||| || ||| |||| |||| ||| |||||||||||||||||||| |||||||||| || ||||||    
T  55678967 gattgcaaagattctggttgaa-ttgggaattaaattttatttaagggtgttattgtcatttagggatgtaac 55678896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 36011411 - 36011353
Alignment:
Q  301 caaaggttttggatgaaattggaaataaaatttta-tttaagggtgtttttgtcattta 358  Q
    ||||| |||||| ||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  36011411 caaagattttgggtgaaattgggaattaaattttattttaagggtatttttgtcattta 36011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 3119303 - 3119379
Alignment:
Q  282 gaagaagagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcattta 358  Q
    ||||||||||||| ||||||||||||||| | ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  3119303 gaagaagagagaacgattgcaaaggtttttggtgaaattgggaattaaattttatctaagggtgtttttgtcattta 3119379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 3119147 - 3119219
Alignment:
Q  194 gaaaaaacataaatgaatcaagaacac--aattttctaaccttccttatttcaaaattgctttcaaatcttgc 264  Q
    |||||| |||||||||||||| || ||  |||||||||||||| ||| ||||||||||||| | |||||||||    
T  3119147 gaaaaaccataaatgaatcaaaaaaacccaattttctaaccttgcttgtttcaaaattgctatgaaatcttgc 3119219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 32902311 - 32902224
Alignment:
Q  179 tgaattgaaatgagggaaaaaa--cataaatgaatcaagaacacaattttctaaccttccttatttcaaaattgctttcaaatcttgc 264  Q
    |||| ||||||||||||||| |  ||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||  |||||||||    
T  32902311 tgaaatgaaatgagggaaaataatcataaatgaattaagagcacaattttctaaccttgcttgtttcaaaattgcttcgaaatcttgc 32902224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 33420896 - 33420817
Alignment:
Q  288 gagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 368  Q
    ||||||| ||| |||||| |||| | |||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||    
T  33420896 gagagaacgatagcaaagattttaggtgaaatgggaattaaaattt-atttaagggtgttattgtcatttatgggtgtaac 33420817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 19340822 - 19340864
Alignment:
Q  95 atgtgaccaaatgcaatgtgtttggtcctgtgaccaactaagaa 138  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  19340822 atgtgaccaaatgcaatgtg-ttggtcatgtgaccaactaagaa 19340864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University