View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19808_low_1 (Length: 688)

Name: NF19808_low_1
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19808_low_1
NF19808_low_1
[»] chr2 (1 HSPs)
chr2 (19-282)||(274714-274974)
[»] chr3 (9 HSPs)
chr3 (327-473)||(5565257-5565403)
chr3 (482-615)||(5565170-5565302)
chr3 (399-515)||(31896518-31896633)
chr3 (517-597)||(14175288-14175364)
chr3 (399-515)||(31945875-31945990)
chr3 (381-434)||(13539565-13539618)
chr3 (399-515)||(31912227-31912342)
chr3 (522-590)||(13539487-13539552)
chr3 (399-515)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (562-653)||(43618606-43618697)
[»] chr7 (1 HSPs)
chr7 (558-605)||(7854246-7854293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (504-582)||(257658-257735)
[»] scaffold0003 (2 HSPs)
scaffold0003 (399-498)||(42747-42845)
scaffold0003 (399-515)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (399-498)||(27444516-27444614)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 274974 - 274714
Alignment:
Q  19 tttgtgtctattgcatccctcttctccttgtcctcctttgaaaatctctcagcctccttgaccaccctctcaacttgtatatcatctgagagataattat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||  ||||||||||||    
T  274974 tttgtgtctattgcatccctcttctccttgtcctcctttgaaaatctctcagcctcattgaccatcctctcaacctgtacatcatccaagagataattat 274875  T
Q  119 aaacaccagaaaaacttcccacatcaacgctggagtaac-nnnnnnntccttctgaagtagtaagtaggtaaagattacatacaatttgtagaagtaaat 217  Q
    ||||||| ||| | ||||||||||||| |||||||||||        |||| | ||||||| ||| || ||| ||||||| ||||||| ||     ||||    
T  274874 aaacaccggaacagcttcccacatcaatgctggagtaacaaaaaaaatcctccagaagtagcaagcagataaggattacaaacaatttata----caaat 274779  T
Q  218 gaatgattagaagatatacctcatcaccaggcaaggtgctcgcaccagtaatggtgatatcttgt 282  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  274778 gaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 327 - 473
Target Start/End: Complemental strand, 5565403 - 5565257
Alignment:
Q  327 atcaatgaatgattcagtattagaaatgaggaatacaaaaactgaaaataacaattaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcg 426  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||    
T  5565403 atcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgacagtgacatcgacacg 5565304  T
Q  427 ttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactc 473  Q
     ||||||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565303 gtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 482 - 615
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  482 tgaagagcgaattccgatgcgatggtcaacgatggtggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgat 581  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  582 gatgcttttactttagtggaagaaggctaaaaaa 615  Q
    ||||||||||||||||||| |||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | |||||| |||||||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||  |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  499 tgcgatggtcaacgatg 515  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 597
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  517 tggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatgatgcttttactttag 597  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatgggtttt-gtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | | |||| |||||||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||  |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  499 tgcgatggtcaacgatg 515  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 13539618 - 13539565
Alignment:
Q  381 ttaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcgttgaagag 434  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcgatgaagag 13539565  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | | |||| |||||||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||  |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  499 tgcgatggtcaacgatg 515  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 590
Target Start/End: Complemental strand, 13539552 - 13539487
Alignment:
Q  522 caactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatgatgctttt 590  Q
    |||||||||| ||||| |||||| |||||||| |  ||||||||||||||||||||| |||||||||||    
T  13539552 caactccggcatggtg-aaagcatgtgggtttgc--agaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 515
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | | |||| ||||||||||| ||  |||||||||| ||||| |||||| |||||| |  ||| | ||||||  |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaa-tctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  499 tgcgatggtcaacgatg 515  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 562 - 653
Target Start/End: Original strand, 43618606 - 43618697
Alignment:
Q  562 gatgaagagatgaagacgatgatgcttttactttagtggaagaaggctaaaaaattaacgaaatgagggaataagaagaagggttttcgtgt 653  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||||||||||| ||||    
T  43618606 gatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 605
Target Start/End: Complemental strand, 7854293 - 7854246
Alignment:
Q  558 agaggatgaagagatgaagacgatgatgcttttactttagtggaagaa 605  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854293 agaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  504 tggtcaacgatggtggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatg 582  Q
    ||||||||||  |||||  ||||||||||||| ||||||||| |||||||| | |||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 498
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | |  ||| | |||||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||  |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 36571 - 36686
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | | |||| ||||||||||| ||| || ||||||| |||||||||| | |||||| || ||| | ||||||  ||||| |    
T  36571 agaagcttctaacagcgacactggcgcgatgaagagcgaa-tccgacacggtgattaacaacggtgatgcaactccggcgcggttaagagcatattccaa 36669  T
Q  499 tgcgatggtcaacgatg 515  Q
     ||| || |||||||||    
T  36670 cgcggtgatcaacgatg 36686  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 498
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  399 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 498  Q
    |||||||||| |||||||| | |  ||| | |||||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||  |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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