View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_11 (Length: 433)
Name: NF19808_low_11
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 42682741 - 42682339
Alignment:
| Q |
16 |
aatatgtagaagctttcaatccatttttcaccacagtttcccatatgggttcacctaaccaccattttggatcatggctacccataaaaaattgatcacc |
115 |
Q |
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| T |
42682741 |
aatatgtagaagctttcaatccatttttcaccacagtttcccatatgggttcacctaaccaccattttggatcatggctacccataaaaaattgatcacc |
42682642 |
T |
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| Q |
116 |
agaaataggatctaaaaaatggttattgattataccatgataagcagggtaaagaccagtagcaatagagtaatgatttggaaaagttaaggatggaaaa |
215 |
Q |
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| T |
42682641 |
agaaataggatctaaaaaatggttattgattataccatgataagcagggtaaagaccagtagcaatagagtaatgatttggaaaagttaaggatggaaaa |
42682542 |
T |
|
| Q |
216 |
acaggaatcaaccctgtttcagcttctgttccatttgaaatcaaacgagtaatacttggagtaaaggttttgaattgataaccaaatcgaaacccatcag |
315 |
Q |
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| T |
42682541 |
acaggaatcaaccctgtttcagcttctgttccatttgaaatcaaacgagtgatagaaggagtaaaggttttgaattgataaccaaatcgaaacccatctg |
42682442 |
T |
|
| Q |
316 |
aggaaatcaaaagtacaacagggcgtttaagtttggtgagaggacgagcaaaactgttcaaaggagaagggttattgttttgggtggtggtttgtgatga |
415 |
Q |
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| T |
42682441 |
aggaaatcaaaagtacaacagggcgtttgagtttggtgagaggacgagcaaaactgttcaaaggagaagagttattgttttgggtggttgtttgtgatga |
42682342 |
T |
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| Q |
416 |
aga |
418 |
Q |
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| T |
42682341 |
aga |
42682339 |
T |
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