View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_12 (Length: 386)
Name: NF19808_low_12
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 8930417 - 8930039
Alignment:
| Q |
1 |
tcgattatggtttccggactctgcatatgcaaaaactttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatcttata |
100 |
Q |
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| T |
8930417 |
tcgagtatggtttccggactctgcatacgcaaaaactttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatcttata |
8930318 |
T |
|
| Q |
101 |
caacacaaacttgtttcagtttaacaccactagattatgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacacagattg |
200 |
Q |
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| T |
8930317 |
caacacaaacttgtttcagtttaacaccaatagattttgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacacagattg |
8930218 |
T |
|
| Q |
201 |
gtgaagttgtatttgtggtcctaatcaagaatattatgac-aaagttgaaattctccatacaaattttataaatcagagtgaatattaatactattatct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930217 |
gtgaagttgtatttgtggtcctaatcaagaatattatgactaaagttgaaattctccatacaaattttataaatcagagtgaatattaatactattatct |
8930118 |
T |
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| Q |
300 |
aatatacttagtttagttacaaaccttaaaccgccctactttttctgcttctttctaattatttaatttccctatgcta |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930117 |
aatatacttagtttagttacaaaccttaaaccgccctactttttctgcttctttctaattatttaatttccctatgcta |
8930039 |
T |
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