View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_13 (Length: 372)
Name: NF19808_low_13
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 34787974 - 34788323
Alignment:
| Q |
8 |
gagagatgaatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcg |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787974 |
gagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcg |
34788073 |
T |
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| Q |
108 |
agagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggcgaggttcctaaggcgaggattgtttatga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788074 |
agagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggcgaggttcctaaggcgaggattgtttatga |
34788173 |
T |
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| Q |
208 |
aagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgaggaaaggtgtaaggaggcagggcgtgcgaggtgt |
307 |
Q |
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| T |
34788174 |
aagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgaggaaaggtgtaaggaggtagggcgtgcgaggtgt |
34788273 |
T |
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| Q |
308 |
atttataaatttgcacttgatcatattccgaaggggagggctgaggtttt |
357 |
Q |
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| T |
34788274 |
atttataaatttgcacttgatcatattccgaaggggagggctgaggtttt |
34788323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 2293223 - 2292875
Alignment:
| Q |
8 |
gagagatgaatgaagtggatgccggatcagcaaggatggttatcttatataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcg |
107 |
Q |
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| T |
2293223 |
gagagatggatgaaatggatgccggatcagcaaggatggctatcttatataaaatttgagctgagatataatgagattgaacgagctagagggattttcg |
2293124 |
T |
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| Q |
108 |
agagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggcgaggttcctaaggcgaggattgtttatga |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2293123 |
agagatttgtattgtgtcatcctagggttggtgcttggatacgttatgcgaagtttgagatgaagaatggcgaggttcctaaggcgaggaatgtttatga |
2293024 |
T |
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| Q |
208 |
aagagcggtgg---agctagcggatgatgaggaagcagagctgctttttgtggcgtttgcggagtttgaggaaaggtgtaaggaggcagggcgtgcgagg |
304 |
Q |
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||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
2293023 |
aagagcggtggagaagcttgcggatgatgaggaagctgagctgctttttgtggcttttgcggagtttgaggaaaggtgtaaggaggctgagcgggcgagg |
2292924 |
T |
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| Q |
305 |
tgtatttataaatttgcacttgatcatattccgaaggggagggctgagg |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2292923 |
tgtatttataaatttgcacttgatcatattccgaaggggagggctgagg |
2292875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 2598110 - 2598026
Alignment:
| Q |
269 |
tttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgagg |
353 |
Q |
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|||| |||||||||||| ||||||| | |||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
2598110 |
tttgtggaaaggtgtaatgaggcagagtgtgcgatgtgtatttataaatttccaattgattatattccgaaggggagggctgagg |
2598026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 33635762 - 33635664
Alignment:
| Q |
122 |
tgtcatcctagggttggtgcttggattcgttatgcaaagtttgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggag |
220 |
Q |
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||||||||||| |||||||||||| | |||||||| || ||||||||||||||||| || ||||||| ||| || | ||||||||||||||| |||||| |
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| T |
33635762 |
tgtcatcctagtgttggtgcttggttacgttatgcgaaatttgagatgaagaatggtgaagttcctagggcaagaagtgtttatgaaagagctgtggag |
33635664 |
T |
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