View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_15 (Length: 328)
Name: NF19808_low_15
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 6939468 - 6939625
Alignment:
| Q |
135 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939468 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
6939567 |
T |
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| Q |
235 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939568 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
6939625 |
T |
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Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 514307 - 514464
Alignment:
| Q |
135 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
514307 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
514406 |
T |
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| Q |
235 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
514407 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
514464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 18307614 - 18307457
Alignment:
| Q |
135 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18307614 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
18307515 |
T |
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| Q |
235 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18307514 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
18307457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 27613506 - 27613580
Alignment:
| Q |
139 |
gcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggttttt |
214 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
27613506 |
gcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattatta-gaattgtaggttttt |
27613580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 157 - 292
Target Start/End: Original strand, 21949056 - 21949191
Alignment:
| Q |
157 |
gcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttggaatttcgggatttatttcaaa |
256 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21949056 |
gcgtttgtaactaatcgtgtgggggattctggtttattattaggaattttaggtttttattggataacgggtagtttggaatttcaggatttatttcaaa |
21949155 |
T |
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| Q |
257 |
tattcaacaacttaatttataagaatgaggtgaatc |
292 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
21949156 |
tattcaataacttaatttataagaatgaggtgaatc |
21949191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 24792485 - 24792603
Alignment:
| Q |
15 |
aaatgttgattaaataactaatataacagcttcaatccaaaagtctactagttattattgagataattcacacaaaatgttacattattaattgaataat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24792485 |
aaatgttgattaaataactaatataacagcttcaatccaaaagtctactagttattattgagataattcacacaaaatgttacattattaattgaataat |
24792584 |
T |
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| Q |
115 |
aatattcatgtgcaattga |
133 |
Q |
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||||||||||||||||||| |
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| T |
24792585 |
aatattcatgtgcaattga |
24792603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 41909992 - 41909839
Alignment:
| Q |
135 |
tgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
41909992 |
tgcggcaaatgcttgtcaaaaagcgtttgtaattaatcgtgtggga---tttggtttattattagaaattttagatttttattggataacggctagtttg |
41909896 |
T |
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| Q |
235 |
gaatttcgggatttatttcaaatattcaacaacttaatttataagaatgaggtgaatc |
292 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41909895 |
gaatttccgaatttatttcaaatattcaacaacttaa-ttataagaatgaggtgaatc |
41909839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 177012 - 177125
Alignment:
| Q |
144 |
tgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggtttttattggataacgggtagtttggaatttcgg |
243 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| || ||| || |
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| T |
177012 |
tgcttgtcaaaaagcttttgtaactaatcgtgtaggggattttggtctattattaggaattttaggttttttttggataacaggtagtttagagtttagg |
177111 |
T |
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| Q |
244 |
gatttatttcaaat |
257 |
Q |
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||||| || ||||| |
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| T |
177112 |
gatttgttccaaat |
177125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 9735471 - 9735586
Alignment:
| Q |
14 |
caaatgttgattaaataactaata--taacagcttcaatccaaaagtctactagttattattgagataattcacacaaaatgttacattattaattgaat |
111 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | | ||| ||| |
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| T |
9735471 |
caaatgttgattaaataactaataaataacagcttcaatccaaaagtcaactagttat---tgagataattcacacaaaatgttacatcagtgatttaat |
9735567 |
T |
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| Q |
112 |
aataatattcatgtgcaat |
130 |
Q |
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|||||||||||| |||||| |
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| T |
9735568 |
aataatattcatctgcaat |
9735586 |
T |
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