View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_17 (Length: 253)
Name: NF19808_low_17
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 12838732 - 12838960
Alignment:
| Q |
22 |
cttcattttgttttaattttgacaataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataaa |
121 |
Q |
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| T |
12838732 |
cttcattttgttttaattttaacaataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataaa |
12838831 |
T |
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| Q |
122 |
gactttgttagggcaatgaaataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcgccccctcaaga |
221 |
Q |
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| T |
12838832 |
gactttgttagggcaatgaaataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcgtcccctcaaga |
12838931 |
T |
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| Q |
222 |
gctgtggtctaagatgagtcaatgctact |
250 |
Q |
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| T |
12838932 |
gatgtggtctaagatgagtcaatgctact |
12838960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 12831905 - 12832135
Alignment:
| Q |
22 |
cttcattttgttttaattttgacaataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataa- |
120 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12831905 |
cttcattttgttttaattttaacaataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataat |
12832004 |
T |
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| Q |
121 |
--agactttgttagggcaatgaaataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcgccccctca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
12832005 |
aaagactttgttagggcaatgaaataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcgtcccatca |
12832104 |
T |
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| Q |
219 |
agagctgtggtctaagatgagtcaatgctac |
249 |
Q |
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| T |
12832105 |
agagctgtggtctaagatgagtcaatgctac |
12832135 |
T |
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