View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_19 (Length: 249)
Name: NF19808_low_19
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8930430 - 8930651
Alignment:
| Q |
1 |
caagaacaatacagaaattgcattttttgtttatttatgaaattgtggttttaattaatacgacaaatctgaatgcatcgtgggtttgttgaaattacgg |
100 |
Q |
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| T |
8930430 |
caagaacaatacagaaattgcgttttttgtttatttatgaaattgtggttttaattaatacgacaaatctgaatgcatcgtgggtttgttgaaattacgg |
8930529 |
T |
|
| Q |
101 |
tgagctaccataagtttacaaaagatacacgttgtggctcatcgtaattttgatgaatctacgtaataccaaaagctacagccatatttgcattatcgaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
8930530 |
tgagctaccatatttttacaaaagatacacgttgtggctcatcgtaattttgacg---------aataccaaaagctacagccatatttgcattatcgaa |
8930620 |
T |
|
| Q |
201 |
taaatattgatcactttttgggtcaaagggc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8930621 |
taaatattgatcactttttgggtcaaagggc |
8930651 |
T |
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