View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19808_low_22 (Length: 222)

Name: NF19808_low_22
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19808_low_22
NF19808_low_22
[»] chr6 (1 HSPs)
chr6 (7-203)||(35091784-35091980)
[»] chr2 (3 HSPs)
chr2 (6-117)||(9259579-9259689)
chr2 (9-115)||(17139937-17140043)
chr2 (27-109)||(31392295-31392377)
[»] chr3 (3 HSPs)
chr3 (9-117)||(1580996-1581105)
chr3 (9-117)||(41404207-41404316)
chr3 (72-117)||(3663805-3663850)
[»] chr1 (2 HSPs)
chr1 (27-117)||(3290493-3290583)
chr1 (9-109)||(32984385-32984486)
[»] chr7 (3 HSPs)
chr7 (9-117)||(30464521-30464630)
chr7 (9-103)||(8160939-8161032)
chr7 (9-117)||(39827621-39827730)
[»] chr8 (1 HSPs)
chr8 (71-117)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 35091980 - 35091784
Alignment:
Q  7 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  107 ttgacgtctcaatcnnnnnnntcactgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataac 203  Q
    ||||||||||||||       |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataac 35091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  6 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 105  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  106 gttgacgtctca 117  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  9 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  108 tgacgtct 115  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  27 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 109  Q
    ||||| |||||||||||||| |  ||||| ||||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  9 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  108 tgacgtctca 117  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  9 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  108 tgacgtctca 117  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  72 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 117  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  27 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 117  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  9 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    |||||||||| |||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  108 tg 109  Q
    ||    
T  32984485 tg 32984486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  9 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  108 tgacgtctca 117  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  9 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 103  Q
    |||| |||||||||||  ||||| || |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  9 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 107  Q
    ||||||||||||||| ||||| || || |||||||| || || ||||||||||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  108 tgacgtctca 117  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 12735515 - 12735469
Alignment:
Q  71 taccctgcagacaactaaggatggaagtgttgttggttgacgtctca 117  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctca 12735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University