View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_23 (Length: 217)
Name: NF19808_low_23
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37202189 - 37201973
Alignment:
| Q |
1 |
ttgatgtaaattaacatggagaataaggatagaatttatacctcgggtgaaggggcaaatagcttccattttgatctgtaaagtgaaaggacgaaaattg |
100 |
Q |
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| T |
37202189 |
ttgatgtaaattaacatggagaataagtatagaatttatacctcgggtgaaggggcaaatagcttccattttgatctgtaaagtgaaaggacgaaaattg |
37202090 |
T |
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| Q |
101 |
aggcaaacccgactctaaagtaatcaaataaataaacgcacaagaacacaacaattgattacagagttcggtcgattgctgggaagaatcatgggataat |
200 |
Q |
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| T |
37202089 |
aggcaaacccgactctaaagtaatcaaataaataaacgcacaagaacacaaagattgattacagagttcggtcgattgctgtgaagaatcatgggatgat |
37201990 |
T |
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| Q |
201 |
agggccatagatcatac |
217 |
Q |
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| T |
37201989 |
agggccatagatcatac |
37201973 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 22622559 - 22622616
Alignment:
| Q |
114 |
tctaaagtaatcaaataaataaacgcacaagaacacaacaattgattacagagttcgg |
171 |
Q |
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| T |
22622559 |
tctaaagtaaacatataaataaacgcacaaaaacacaacaattgatcatagagttcgg |
22622616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 15853425 - 15853493
Alignment:
| Q |
103 |
gcaaacccgactctaaagtaatcaaataaataaacgcacaagaacacaacaattgattacagagttcgg |
171 |
Q |
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| T |
15853425 |
gcaaacccaattctaaagtgaacagataaataaacgcacatgaatacaatgattgattacggagttcgg |
15853493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 4918227 - 4918273
Alignment:
| Q |
125 |
caaataaataaacgcacaagaacacaacaattgattacagagttcgg |
171 |
Q |
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| T |
4918227 |
caaataaaaaaacacacaagaacacaacaattgatcacagagttcgg |
4918273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 7711634 - 7711604
Alignment:
| Q |
128 |
ataaataaacgcacaagaacacaacaattga |
158 |
Q |
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| T |
7711634 |
ataaataaacgcacaagaacacaacaattga |
7711604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 4489156 - 4489210
Alignment:
| Q |
114 |
tctaaagtaatcaaataaataaacgcacaagaacacaacaattgattacagagtt |
168 |
Q |
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|||||||||| || |||||||||||||||| ||||||||| ||||| | |||||| |
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| T |
4489156 |
tctaaagtaaacatataaataaacgcacaaaaacacaacagttgatcatagagtt |
4489210 |
T |
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