View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_3 (Length: 545)
Name: NF19808_low_3
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Original strand, 2275019 - 2275538
Alignment:
| Q |
17 |
attaaaatatatagaaattgaaagtattgatgattgatagatacctgaacactgtacttgggtattgcccaagtttgaaggttaagtttgtcatcaaaac |
116 |
Q |
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| T |
2275019 |
attaaattatatagaaattgaaagtattgatgattgatagatacctgaacactgtacttgggtattgcccaagtttgaaggttaagtttgtcatcaaaac |
2275118 |
T |
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| Q |
117 |
ggtttctttcaacaatgaatgtgcggccgtagacccatgtgaggaacatggaccaagctgtaaaaggccacatcaaccaaaggtaccacttagatgtgta |
216 |
Q |
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| T |
2275119 |
ggtttctttcaacaatgaatgtgcggccgtagacccatgtgaggaacatggaccaagctgtaaaaggccacatcaaccaaaggtaccacttagatgtgta |
2275218 |
T |
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| Q |
217 |
tggcttagaagccaaggcagcaaatccaaatcttagatgataaatggattctggggttgttaaatgtgttaagtggacaacatttggtgtctcttccttt |
316 |
Q |
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| T |
2275219 |
tggcttagaagccaaggcagcaaatccaaatcttagatgataaatggattctggggttgttaaatgtgttaagtggacaacatttggtgtctcttccttt |
2275318 |
T |
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| Q |
317 |
ctttttaatgttgactcatgcaactcatctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaact |
416 |
Q |
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| T |
2275319 |
ctttttaatgttgactcatgcaactcatctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaact |
2275418 |
T |
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| Q |
417 |
gagtatggtgcaaagagtgaaacctgcagtaataacaagtgaatttatttattaccaactcaaaagggcccacaatctttgaatttgggtgcaagattga |
516 |
Q |
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| T |
2275419 |
gagtatggtgcaatgagtgaaacctgcagtaataacaagtgaatttatttattaccaactcaaaagggtccacaatctttgaatttgggtgcaagattga |
2275518 |
T |
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| Q |
517 |
aattcaactcctttgcttct |
536 |
Q |
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| T |
2275519 |
aattcaactcctttgcttct |
2275538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 442
Target Start/End: Original strand, 2255276 - 2255374
Alignment:
| Q |
344 |
tctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaactgagtatggtgcaaagagtgaaacctg |
442 |
Q |
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| T |
2255276 |
tctgaagccttgtcaacagttccatagatgtaatcataaattggcatgaatagtgaataattagtccgaaattgtgtatgatgcaatgagtggaacctg |
2255374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 35355221 - 35355181
Alignment:
| Q |
365 |
ccataaatgtagtcataaagtggcatgaagagtgagtagtt |
405 |
Q |
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| T |
35355221 |
ccataaatgtagtcatacattggcatgaaaagtgagtagtt |
35355181 |
T |
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