View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_4 (Length: 509)
Name: NF19808_low_4
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 209 - 383
Target Start/End: Original strand, 4175959 - 4176133
Alignment:
| Q |
209 |
ggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttc |
308 |
Q |
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| T |
4175959 |
ggagtaatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttc |
4176058 |
T |
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| Q |
309 |
aagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
383 |
Q |
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| T |
4176059 |
aagagagctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
4176133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 4175757 - 4175884
Alignment:
| Q |
19 |
tcagatccgtcggaatttcttcccggcggcgagttttccgatgagacggcacaggttagcatgtcgttgatggatttgttggaagagagtgaaattgaat |
118 |
Q |
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| T |
4175757 |
tcagatccgtcggaatttcttcccggcggcgagttttccgatgagacggcacaggttagcatgtcgttgatggatttgttggaagagagtgaaattgaat |
4175856 |
T |
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| Q |
119 |
tggaacgaattagtgatgttgttgatga |
146 |
Q |
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| T |
4175857 |
tggaacgaattagtgatgttgttgatga |
4175884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 55518567 - 55518691
Alignment:
| Q |
259 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcatttta |
358 |
Q |
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| T |
55518567 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
55518666 |
T |
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| Q |
359 |
ttttagaagttcttgatattttctg |
383 |
Q |
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| T |
55518667 |
ttctcgagattctcgatattttctg |
55518691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 8902901 - 8902983
Alignment:
| Q |
235 |
tgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagct |
317 |
Q |
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| T |
8902901 |
tgttgtgtgtgcatggggaggaataaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagct |
8902983 |
T |
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