View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_5 (Length: 509)
Name: NF19808_low_5
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 40061358 - 40060851
Alignment:
| Q |
1 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggcaaaaatttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40061358 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggcaaaaatttca |
40061259 |
T |
|
| Q |
101 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061258 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
40061159 |
T |
|
| Q |
201 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaa--------------aaaacacaattgtccagtgtaattt |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40061158 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaattt |
40061059 |
T |
|
| Q |
287 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtaca-tttgtgatggctacaacatgaac |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
40061058 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaac |
40060959 |
T |
|
| Q |
386 |
atcatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggt |
485 |
Q |
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| T |
40060958 |
aacatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggt |
40060859 |
T |
|
| Q |
486 |
caaagttg |
493 |
Q |
| |
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|||||||| |
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|
| T |
40060858 |
caaagttg |
40060851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 493
Target Start/End: Complemental strand, 40087228 - 40086750
Alignment:
| Q |
21 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || | |
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| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
|
| Q |
116 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
215 |
Q |
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| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
|
| Q |
216 |
acttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
315 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||| | |
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|
| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
316 |
atgtgatattattaatttatcttcttcgatgtattaccagtggtacatttgtgatggctacaacatgaacatcatatattt-agtatgtaggctgaagga |
414 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| | || | ||| ||||||| |
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|
| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaaca--atagatttcaataagaaggttgaagga |
40086831 |
T |
|
| Q |
415 |
--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttg |
493 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||| |
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|
| T |
40086830 |
gtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttg |
40086750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 90 - 493
Target Start/End: Complemental strand, 40079393 - 40078977
Alignment:
| Q |
90 |
caaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggc |
189 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||| || |||||||||| ||||| ||||||||||||| ||| |
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| T |
40079393 |
caaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggc |
40079294 |
T |
|
| Q |
190 |
cttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaa-aaacac----aattgtccagtgtaat |
284 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||| | | |||||||| | |||| |||||||||||||||| |
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|
| T |
40079293 |
cttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaat |
40079194 |
T |
|
| Q |
285 |
ttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttctt-------cgatgtattaccagtggtacatttgtgatggctaca |
377 |
Q |
| |
|
||||||| | ||| |||||| |||||||| ||| ||||||||||||||||||||| ||| |||||||||||||| |||||| |||||||||| |
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|
| T |
40079193 |
ttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctaca |
40079094 |
T |
|
| Q |
378 |
acatgaacatcatatatttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccg |
475 |
Q |
| |
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||||||||| ||||| | |||| ||| |||| || ||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
40079093 |
acatgaacaaaatata-ctcgtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccg |
40078995 |
T |
|
| Q |
476 |
gtacttcggtcaaagttg |
493 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
40078994 |
gtacttcggtcaaagttg |
40078977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
158 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
241 |
Q |
| |
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||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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