View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19808_low_7 (Length: 477)
Name: NF19808_low_7
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 29611116 - 29610657
Alignment:
| Q |
1 |
gcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataaagatgactatggatactaattttctataaattgttgttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611116 |
gcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataacgatgactatggatactaattttctataaattgttgttaa |
29611017 |
T |
|
| Q |
101 |
aatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggccttgcaatcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
29611016 |
aatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttcgataatgttctggaggttggccttgcaatcctg |
29610917 |
T |
|
| Q |
201 |
aaacataagaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcattcacata |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29610916 |
aaacataagaagtcatattttggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcattcacata |
29610817 |
T |
|
| Q |
301 |
tacaagtgagttttacatctggaagttcatctattttctatagaaagaaatttaaagtatagcgagttcaataacaaattcaaaagttgccttacagata |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29610816 |
tgcaagtgagttttacatctggaagttcatctattttttatagaaataaatttaaagtatagcgagttcaataacaaattcaaaagttgccttacagata |
29610717 |
T |
|
| Q |
401 |
cactaggagctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctg |
460 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29610716 |
cactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctg |
29610657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 29583221 - 29583385
Alignment:
| Q |
137 |
tacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggccttgcaatcctgaaacataagaagtcatatttcggacaatttcggtgt |
236 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29583221 |
tacctcccagccacaaatgggtaaccccttggatgtctttctggaggttggccttgcaaacctgaaacataagaagtcatatttcggacaatttcagtgt |
29583320 |
T |
|
| Q |
237 |
cttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcattcacatat |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
29583321 |
cttcgctgtaactctcatagcatcttccccatctgggatctttgcagacctgtccattcacatat |
29583385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 29583966 - 29584037
Alignment:
| Q |
388 |
tgccttacagatacactaggagctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagct |
459 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
29583966 |
tgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagttcaagtgatattgcagct |
29584037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 25128579 - 25128657
Alignment:
| Q |
209 |
gaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacct |
287 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| || |||| |||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
25128579 |
gaagtcatctttcggactatttcagtgtcttcactataacactcatagcatcttccccacctaggatctttgcatacct |
25128657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University