View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19808_low_9 (Length: 456)
Name: NF19808_low_9
Description: NF19808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19808_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 6680667 - 6681085
Alignment:
| Q |
19 |
caaactttggggcattaaagctgcgtactatacaacatggttggtgtcttttggaatacatgtcacatgatgttagtaagccttttctttggaacccaca |
118 |
Q |
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| T |
6680667 |
caaactttggggcattaaagctgcgtactatacaacatggttggtgtcttttggaatacatgtcacatgatgttagtaagccttttctttggaacccaca |
6680766 |
T |
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| Q |
119 |
taactccaagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgc |
218 |
Q |
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| T |
6680767 |
taactccaagaaaatcaatctcccactccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgc |
6680866 |
T |
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| Q |
219 |
tcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggc |
318 |
Q |
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| T |
6680867 |
tcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggc |
6680966 |
T |
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| Q |
319 |
tgcgtccattccattttcacccttttgatgaaagaactaggagagcctcttttgataacccagtttactgcaatggttgcttgtatgctgaaataaggac |
418 |
Q |
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| T |
6680967 |
tgcgtccattccattttcacccttttgatgaaaggactaggagagcctcttttgataacccagtttactgcaatggttgcttgtatgctgaaataaggac |
6681066 |
T |
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| Q |
419 |
tacagatacatcttcgttc |
437 |
Q |
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| T |
6681067 |
tacagatacatcttcgttc |
6681085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 141 - 313
Target Start/End: Original strand, 6675491 - 6675666
Alignment:
| Q |
141 |
ccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaatttatttattttcatcac |
240 |
Q |
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| T |
6675491 |
ccaccccttaaacacaatggcactatttttggtaattgcattttgtcatcccctccaactacaaatgatgaaacatgctccatttatttattttcatcac |
6675590 |
T |
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| Q |
241 |
atagcctttgaatgttctactaccaacttggagataagcaatggac---taaagtgtgcttttataatgaaattgt |
313 |
Q |
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| T |
6675591 |
atagcctttcaatgttctactaccaacttggagataagcaatggacttataaagtgtgcctttataatgaaattgt |
6675666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 103 - 302
Target Start/End: Complemental strand, 6664763 - 6664564
Alignment:
| Q |
103 |
ttctttggaacccacataactccaagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctac |
202 |
Q |
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| T |
6664763 |
ttctttggaacccacttaaccataagaaaatcatgcttccaccccttaaacacaatggcactccttttggtaattgcattttgacatcccctccaactag |
6664664 |
T |
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| Q |
203 |
aaatgatgaaacatgctcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttat |
302 |
Q |
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| T |
6664663 |
aaatgatgaaatatgttccatttatttattttgctcacgttgcccttcaatattctactaccaacttggagataagcaatgtactaaagtgtgcttttat |
6664564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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