View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19809_high_6 (Length: 227)
Name: NF19809_high_6
Description: NF19809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19809_high_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40358119 - 40358345
Alignment:
| Q |
1 |
caacctgaggcagagagaatttgacaccaaggccagctataagaccagcaagatcatgttccatgtactcaaataccaagtaaagacttgatgatattct |
100 |
Q |
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| T |
40358119 |
caacctgaggtagagagaatttgacaccaaggccagctataagaccagcaagatcatgttccatgtactcaaataccaagtaaagacttgatgatattct |
40358218 |
T |
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| Q |
101 |
tgaagtaaccaaaccctcaagctttataacattggggtgatcaagcttcctcaaaacaagaatctctcttgccataaacttcacactctcagcgtccaaa |
200 |
Q |
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| T |
40358219 |
tgaagtaaccaaaccctcaagctttataacattggggtgatcaagcttcctcaaaacaagaatctctcttgccataaacttcacactctcagcgtccaaa |
40358318 |
T |
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| Q |
201 |
ttatcaattctaactttcttcaatgcc |
227 |
Q |
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| T |
40358319 |
ttatcaattctaactttcttcaatgcc |
40358345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 1663298 - 1663126
Alignment:
| Q |
55 |
catgttccatgtactcaaataccaagtaaagacttgatgatattcttgaagtaaccaaaccctcaagctttataacattggggtgatcaagcttcctcaa |
154 |
Q |
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| T |
1663298 |
catgttccatatattcacacacaaaataaagactgcatgacattctagaagtaaccaaaccttcaagatttacagcatttggatgatcaagcttcctcaa |
1663199 |
T |
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| Q |
155 |
aacaagaatctctcttgccataaacttcacactctc-agcgtccaaattatcaattctaactttcttcaatgcc |
227 |
Q |
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| T |
1663198 |
aacaagcatctctcttgccataaacttcacactctctagc-tccaaattataaaatctcactttcttcaatgcc |
1663126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 1747008 - 1746832
Alignment:
| Q |
51 |
agatcatgttccatgtactcaaataccaagtaaagacttgatgatattcttgaagtaaccaaaccctcaagctttataacattggggtgatcaagcttcc |
150 |
Q |
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| T |
1747008 |
agatcgtgttccatatattcacacacaaaataaagactgcatgacattctagaagtaaccaaatcttcaagatttacatcatttggatgatcaagcttcc |
1746909 |
T |
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| Q |
151 |
tcaaaacaagaatctctcttgccataaacttcacactctc-agcgtccaaattatcaattctaactttcttcaatgcc |
227 |
Q |
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| T |
1746908 |
ccaaaacaagcatctctcttgccataaacttcacactctctagc-tccaaattataaaatctcactttcttcaatgcc |
1746832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 45250114 - 45250295
Alignment:
| Q |
45 |
ccagcaagatcatgttccatgtactcaaataccaagtaaagacttgatgatattcttgaagtaaccaaaccctcaagctttataacattggggtgatcaa |
144 |
Q |
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| T |
45250114 |
ccagcaagatcatgttccatatattcaaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaa |
45250213 |
T |
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| Q |
145 |
gcttcctcaaaacaagaatctctcttgccataaacttcacactctcagcgtccaaattatcaattctaactttcttcaatgc |
226 |
Q |
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| T |
45250214 |
gtttcctcaaaacaagtatctctcttgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgc |
45250295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 1723612 - 1723537
Alignment:
| Q |
106 |
taaccaaaccct-caagctttataacattggggtgatcaagcttcctcaaaacaagaatctctcttgccataaacttcac |
184 |
Q |
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|||||||||||| |||| |||| |||||| || ||||||||||||||||| ||||| | |||||||||||||||||| |
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| T |
1723612 |
taaccaaacccttcaagatttacaacatttggatgatcaagcttcctcaagacaagca----tcttgccataaacttcac |
1723537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 4069971 - 4070003
Alignment:
| Q |
41 |
aagaccagcaagatcatgttccatgtactcaaa |
73 |
Q |
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| T |
4069971 |
aagaccagcaagatcatgttccatgtattcaaa |
4070003 |
T |
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