View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19809_low_6 (Length: 249)
Name: NF19809_low_6
Description: NF19809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19809_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41938474 - 41938250
Alignment:
| Q |
1 |
ttgaatgttggaaccacgcacacaagtttattcaaagatggtgatgccatttgatctttctttcatttgcataccacataattctcaccctcgtgacgtc |
100 |
Q |
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| T |
41938474 |
ttgaatgttggaaccacgcacacaagtttattcaaagatggtgatgccatttgatctttctttcatttgcataccacataattctcaccctcgtgaagtc |
41938375 |
T |
|
| Q |
101 |
ttcatgatctttctttcgtttgcataccacataattctcatgacgtctttgaaatttttcttctgttgaa-aaaataaacttgatgcgtttatgcagatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41938374 |
ttcatgatctttctttcgtttgcataccacataattctcatgacgtctttgaaatttttcttctgttgaaaaaaataatcttgatgcgtttatgcagatt |
41938275 |
T |
|
| Q |
200 |
tttcacttgttttcggtttatttaa |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
41938274 |
tttcacttgttttcggtttatttaa |
41938250 |
T |
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