View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19809_low_7 (Length: 246)
Name: NF19809_low_7
Description: NF19809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19809_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 47753645 - 47753851
Alignment:
| Q |
13 |
aatatgacaaggcaggaatatgttgcacatttgagaaggtacataaatctgttaattagcaattattttgtagtagaaaggttaacatcattatatgaca |
112 |
Q |
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| T |
47753645 |
aatatgacaaggcaggaatatgttgcacatttgagaaggtacataaatctgttaattagcaattattttgtagtagaaaggttaacatcattatatgaca |
47753744 |
T |
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| Q |
113 |
atcatgatggattagtattcatttatttttgcagaaaaagcagtggattctcaaggggtgcttcaatgtacagaggcgtgacaaggtttattcagttctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47753745 |
atcatgatggattagtattcatttatttttgcagaaaaagcagtggattctcaaggggtgcttcaatgtacagaggcgtgacaaggtttattcagttctc |
47753844 |
T |
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| Q |
213 |
ttgtccc |
219 |
Q |
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||||||| |
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| T |
47753845 |
ttgtccc |
47753851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 4845980 - 4845919
Alignment:
| Q |
140 |
tttgcagaaaaagcagtggattctcaaggggtgcttcaatgtacagaggcgtgacaaggttt |
201 |
Q |
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| T |
4845980 |
tttgcagaaagagtagtggtttttcaaggggtgcttcaatgtatagaggggtgacaaggttt |
4845919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 40190346 - 40190401
Alignment:
| Q |
144 |
cagaaaaagcagtggattctcaaggggtgcttcaatgtacagaggcgtgacaaggt |
199 |
Q |
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| T |
40190346 |
cagaaaaagcagtggattctcaagaggggcatccatgtacagaggagtaacaaggt |
40190401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40190236 - 40190276
Alignment:
| Q |
13 |
aatatgacaaggcaggaatatgttgcacatttgagaaggta |
53 |
Q |
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||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
40190236 |
aatatgacaagacaggaatatgttgctcatttaagaaggta |
40190276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 41964481 - 41964440
Alignment:
| Q |
141 |
ttgcagaaaaagcagtggattctcaaggggtgcttcaatgta |
182 |
Q |
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| T |
41964481 |
ttgcagaaagagcagtggattttcaaggggtgcatcaatgta |
41964440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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