View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19809_low_8 (Length: 236)
Name: NF19809_low_8
Description: NF19809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19809_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47753946 - 47754168
Alignment:
| Q |
1 |
catggtaggtggcaagctaggattggaagagttgctggtaacaaggacctttaccttggaacattcagtaagtagattcctccaacattgttactaaaaa |
100 |
Q |
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| T |
47753946 |
catggtaggtggcaagctaggattggaagagttgctggtaacaaggacctttaccttggaacattcagtaagtagattcctccaacattgttactaaaaa |
47754045 |
T |
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| Q |
101 |
tgtgttaacaaaagatttaagcatttgaattatgaacaagggaatgtttatgtatttttaaagttatgcattgtttaaagtaaattcattcacaggaatt |
200 |
Q |
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| T |
47754046 |
tgtgttagcaaaagatttaagcatttgaattatgaacaagggaatgtttatgtatttttaaagttatgcattgtttaaagtaaattcattcacaggaatt |
47754145 |
T |
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| Q |
201 |
taatttacttatgtcattttctg |
223 |
Q |
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| T |
47754146 |
taatttacttatgtcattttctg |
47754168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30618757 - 30618686
Alignment:
| Q |
1 |
catggtaggtggcaagctaggattggaagagttgctggtaacaaggacctttaccttggaacattcagtaag |
72 |
Q |
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| T |
30618757 |
catggtagatggcaagctaggattggaagagttgcaggcaacaaagatctctacctaggaactttcagtaag |
30618686 |
T |
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