View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1980_high_3 (Length: 246)
Name: NF1980_high_3
Description: NF1980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1980_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 40198925 - 40199156
Alignment:
| Q |
1 |
ttttcctacaaatagcttgatgatagctaaggacaacgatgaaaaactatagatcaaaccgttaaaagagatttagatgtaaatacacatctctaaaata |
100 |
Q |
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| T |
40198925 |
ttttcctacaaatagcttgatgatagctaaggacaacgatgaaaaactatagatcaaaccgttaaaagagatttagatgtaaatacacatctctaaaata |
40199024 |
T |
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| Q |
101 |
aagatatgatagggaattacgttgtttggccagggtgatactatagcacaacagacaaagaatgttccaggtacttaagagtgtaatccaagatcttttc |
200 |
Q |
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| T |
40199025 |
aagatatgatagggaattacgttgtttggtcagggtgatactatagcacaacagacaaagaatgttccaggtactt-agagtgtaatccaagatcttttc |
40199123 |
T |
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| Q |
201 |
gactaaaggtaaatccattaataaatctatgat |
233 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
40199124 |
gactaaaggtaaatccattaataactctatgat |
40199156 |
T |
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