View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1980_high_5 (Length: 237)
Name: NF1980_high_5
Description: NF1980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1980_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 47417608 - 47417438
Alignment:
| Q |
67 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgcaacggcccataat |
166 |
Q |
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| T |
47417608 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgtaacggcccataat |
47417509 |
T |
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| Q |
167 |
tttgnnnnnnncctagttcgatgctaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcct |
237 |
Q |
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| T |
47417508 |
tttgtctttttcctagttcgatgcaaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcct |
47417438 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 47406949 - 47406819
Alignment:
| Q |
9 |
tatttccatttgtgccaaaattgaatgcagttcttaacacttcctaaacttaatttctaattcaaattgaaattctgctgtttattcgtccaatgatctt |
108 |
Q |
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| T |
47406949 |
tatttccatttgtgccaaaactgaatccaattcttaatgattcgtaaacttcatttctaattcaaattgaaattcagctgtttatttgtccagtg---tt |
47406853 |
T |
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| Q |
109 |
caattgaatttctaggacgaaattgttttaagag |
142 |
Q |
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| T |
47406852 |
caattgaatttcgaggatggaattattttaagag |
47406819 |
T |
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