View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1980_high_6 (Length: 225)
Name: NF1980_high_6
Description: NF1980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1980_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 9604943 - 9605152
Alignment:
| Q |
2 |
agaaacactttaaagatcctaccc-aagttttcacatacacgtgg-catctcttaaatataagttgatcttgtacatgtaagaattaataacttggtcag |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9604943 |
agaaacactttaaagatcctaccccaagttttcacatacacgtgggcatctctcaaatataagttgattttgtacatgtaagaattaataacttggtcag |
9605042 |
T |
|
| Q |
100 |
aaaagcaagatgatatataagctttact-aaacactttgttagcaccctcaattc--atatatataaaaaatgtcccacgatcatgggtccaaaaaactt |
196 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
9605043 |
aaaagcaagatgatatataagctttactcaaacactttgttagcaccttcaattcatatatatatataaaatgtcacacgatcatgggtccaaaaaactt |
9605142 |
T |
|
| Q |
197 |
gagtacgtgg |
206 |
Q |
| |
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|||||||||| |
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| T |
9605143 |
gagtacgtgg |
9605152 |
T |
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