View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1980_low_5 (Length: 239)
Name: NF1980_low_5
Description: NF1980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1980_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42772329 - 42772099
Alignment:
| Q |
1 |
aaaacgtgattggacaaaattacaggcctttccacaacgcttatgctgaattgttattaacaaagtaacagagagggtgaatttagttttacaacagtta |
100 |
Q |
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| T |
42772329 |
aaaacgtgattggacaaaattacaggcctttccacaacgcttatgctgaattgttattaacaaagtaacagagagggtgaatttagttttacaacagtta |
42772230 |
T |
|
| Q |
101 |
caaaaaagttataaaagcaaaggaatgcttatattttttctgaaacttgtttctaagacaaaaatttcaaatgagaaaaccaatgtcttcttcatccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42772229 |
caaaaaagttataaaagcaaaggaatgcttatat-ttttctgaaacttgtttctaagacaataatttcaaatgagaaaaccaatgtcttcttcatccatt |
42772131 |
T |
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| Q |
201 |
ggtcataccttattgttacttctcctttgctt |
232 |
Q |
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| |||||||||||||||||||||||||||||| |
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| T |
42772130 |
gatcataccttattgttacttctcctttgctt |
42772099 |
T |
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