View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1980_low_8 (Length: 214)
Name: NF1980_low_8
Description: NF1980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1980_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 6448236 - 6448420
Alignment:
| Q |
14 |
caaaggtgaatcatagctcaaatctcgagttatattgtgatatgtttcatttggtaatttatttgttaaacatgcattaagataagatatagtcatttag |
113 |
Q |
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| T |
6448236 |
caaaggtgaatcatagctcaaatctcgagttatattgtgatatgtttcatttcgtaatttatttgttaaacatgcattaagataagatatagtcatttag |
6448335 |
T |
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| Q |
114 |
ttttgaaaataatatacacgatttttacttacttacttaaacattttacaagattcttattgtcttaattaaaacactgaccattt |
199 |
Q |
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| T |
6448336 |
ttttgaaaataatatacacgatttctacttacttacttaaacattttacaagattcttattgtcttaatt-aaacactgaccattt |
6448420 |
T |
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