View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19810_low_1 (Length: 581)
Name: NF19810_low_1
Description: NF19810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19810_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 274 - 552
Target Start/End: Complemental strand, 26641764 - 26641486
Alignment:
| Q |
274 |
ttaacatacacaagtaaatatgaattgcatcaacagatgacgacataaagtaacatataggggaatccctgtgacagcttgatcagctctatgcagtgat |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641764 |
ttaacatacacaagtaaatatgaattgcatcaacagatgacgacataaagttacatataggggaatccctgtgacagcttgatcagctctatgcagtgat |
26641665 |
T |
|
| Q |
374 |
agacaatccgatccataaggaaatatcttttgcaagacataagagtttttctcgcacatgttcttactatcctcactccaaaactcttctcccagaatta |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641664 |
agacaatccgatccataaggaaatatcttttgcaagacataagagttttcctcgcacatgttcttactatcctcactccaaaactcttctcccagaatta |
26641565 |
T |
|
| Q |
474 |
taaacgcaaatgcgtgttaaaggctgtgttattgctagtactcctcacaatacaaacacacatttggatatttatttac |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641564 |
taaacgcaaatgcgtgttaaaggctgtgttattgctagtactcctcacaatacaaacacacatttggatatttatttac |
26641486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 274 - 552
Target Start/End: Complemental strand, 26747730 - 26747452
Alignment:
| Q |
274 |
ttaacatacacaagtaaatatgaattgcatcaacagatgacgacataaagtaacatataggggaatccctgtgacagcttgatcagctctatgcagtgat |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26747730 |
ttaacatacacaagtaaatatgaattgcatcaacagatgacgacataaagttacatataggggaatccctgtgacagcttgatcagctctatgcagtgat |
26747631 |
T |
|
| Q |
374 |
agacaatccgatccataaggaaatatcttttgcaagacataagagtttttctcgcacatgttcttactatcctcactccaaaactcttctcccagaatta |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26747630 |
agacaatccgatccataaggaaatatcttttgcaagacataagagttttcctcgcacatgttcttactatcctcactccaaaactcttctcccagaatta |
26747531 |
T |
|
| Q |
474 |
taaacgcaaatgcgtgttaaaggctgtgttattgctagtactcctcacaatacaaacacacatttggatatttatttac |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26747530 |
taaacgcaaatgcgtgttaaaggctgtgttattgctagtactcctcacaatacaaacacacatttggatatttatttac |
26747452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26642042 - 26641817
Alignment:
| Q |
1 |
actattggagtccttgttatgcatccatttatttatagaattaataaagagcttaacccaaagtaacatatgttatgctgtaaaaattgtgaatcacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
26642042 |
actattggagtccttgttatgcatccatttatttatagaattaataaagagcttaaccccaagtaacatatgttatgctgtaaaaattgtgaataacatg |
26641943 |
T |
|
| Q |
101 |
aacaggttgtgaataaagcaaatttactgcctaacccaaaga-----atcatggtaattacagtaatcctccgactaaaagtgcgtaaatggacgttatg |
195 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641942 |
aacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaattacagtaatcctccgactaaaagtgcgtaaatggacgttatg |
26641843 |
T |
|
| Q |
196 |
gatcataattctgaaatttggcaagt |
221 |
Q |
| |
|
||||| |||||||||||||||||||| |
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|
| T |
26641842 |
gatcaaaattctgaaatttggcaagt |
26641817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26748008 - 26747783
Alignment:
| Q |
1 |
actattggagtccttgttatgcatccatttatttatagaattaataaagagcttaacccaaagtaacatatgttatgctgtaaaaattgtgaatcacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
26748008 |
actattggagtccttgttatgcatccatttatttatagaattaataaagagcttaaccccaagtaacatatgttatgctgtaaaaattgtgaataacatg |
26747909 |
T |
|
| Q |
101 |
aacaggttgtgaataaagcaaatttactgcctaacccaaaga-----atcatggtaattacagtaatcctccgactaaaagtgcgtaaatggacgttatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26747908 |
aacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaattacagtaatcctccgactaaaagtgcgtaaatggacgttatg |
26747809 |
T |
|
| Q |
196 |
gatcataattctgaaatttggcaagt |
221 |
Q |
| |
|
||||| |||||||||||||||||||| |
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| T |
26747808 |
gatcaaaattctgaaatttggcaagt |
26747783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 26828999 - 26828938
Alignment:
| Q |
386 |
ccataaggaaatatcttttgcaagacataagagtttttctcgcacatgttcttactatcctc |
447 |
Q |
| |
|
||||||||||||||| ||||||| | |||||| ||||||||||||| ||||||||||||||| |
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|
| T |
26828999 |
ccataaggaaatatcgtttgcaatatataagaatttttctcgcacaagttcttactatcctc |
26828938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 27649481 - 27649531
Alignment:
| Q |
85 |
aattgtgaatcacatgaacaggttgtgaataaagcaaatttactgcctaac |
135 |
Q |
| |
|
|||||||||| ||| |||||| || |||||||||||||||||||||||||| |
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| T |
27649481 |
aattgtgaataacaggaacagattatgaataaagcaaatttactgcctaac |
27649531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 26829108 - 26829060
Alignment:
| Q |
274 |
ttaacatacacaagtaaatatgaattgcatcaacagatgacgacataaa |
322 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||| ||||||||| |
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|
| T |
26829108 |
ttaacgtacacaagtaaatatgaatttcttcaacagatggcgacataaa |
26829060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 29269319 - 29269373
Alignment:
| Q |
368 |
agtgatagacaatccgatccataaggaaatatcttttgcaagacataagagtttt |
422 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
29269319 |
agtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtttt |
29269373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 29268916 - 29269011
Alignment:
| Q |
89 |
gtgaatcacatgaacaggttgtgaataaagcaaatttactgcctaacccaaaga-----atcatggtaattacagtaatcctccgactaaaagtgc |
179 |
Q |
| |
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|||||| ||| |||||| ||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||| || |||||||||||| |
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| T |
29268916 |
gtgaataacaggaacagattgtgaataaatcaaatttactgccaaacccatagaatcagatcatggtaattacagtaagccaatgactaaaagtgc |
29269011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 18672737 - 18672771
Alignment:
| Q |
505 |
ttgctagtactcctcacaatacaaacacacatttg |
539 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18672737 |
ttgctagtactcctcgcaatacaaacacacatttg |
18672771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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