View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19810_low_2 (Length: 505)
Name: NF19810_low_2
Description: NF19810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19810_low_2 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 26642042 - 26642518
Alignment:
| Q |
16 |
tatagattttaaattcataggcaatctttttataaatggctacacatgtagtttcgttaacaatgtcaatcatttctatctcgtgatagtaccagatgac |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642042 |
tatagattttaaattcgtaggcaatctttttataaatggatacacatgtagtttcgttaacaatgtcaatcatttctatctcgtgatagtaccagatgac |
26642141 |
T |
|
| Q |
116 |
acatatctaaggattgtatatcaatcttcttctagcagaagcacaaagactaaagatttgttcttttaatggcaaaatactacgtacagtcgctattgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642142 |
acatatctaaggattgtatatcaaacttcttctagcagaagcacaaagactaaagatttgttcttttaatggcaaaatactacgtacagtcgctattgaa |
26642241 |
T |
|
| Q |
216 |
accttttaatcaagttg----ttagtagttggatgcaataggcatacacaaaaggaaacaacaaataaaatgaatttcatgaaactt-aataatgcatat |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26642242 |
accttttaatcaagttgttaattagtagttggatgcaataggcatacacaaaaggaaacaacaaataaaatgaatttcatgaaacttaaataatgcatat |
26642341 |
T |
|
| Q |
311 |
tgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaatgacgacaagtttagagggagtatgaaaactgttgtgttgttctggaaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642342 |
tgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaatgacgacaagtttagagggagtatgaaaactgttgtgttgttctggaaaa |
26642441 |
T |
|
| Q |
411 |
caaatgttctttttgctgaaaagacagagttgttctgtttttgttcctattatgattgttgctattattaatactag |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642442 |
caaatgttctttttgctgaaaagacagagttgttctgtttttgttcctattatgattgttgctattattaatactag |
26642518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 26748008 - 26748484
Alignment:
| Q |
16 |
tatagattttaaattcataggcaatctttttataaatggctacacatgtagtttcgttaacaatgtcaatcatttctatctcgtgatagtaccagatgac |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748008 |
tatagattttaaattcgtaggcaatctttttataaatggatacacatgtagtttcgttaacaatgtcaatcatttctatctcgtgatagtaccagatgac |
26748107 |
T |
|
| Q |
116 |
acatatctaaggattgtatatcaatcttcttctagcagaagcacaaagactaaagatttgttcttttaatggcaaaatactacgtacagtcgctattgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748108 |
acatatctaaggattgtatatcaaacttcttctagcagaagcacaaagactaaagatttgttcttttaatggcaaaatactacgtacagtcgctattgaa |
26748207 |
T |
|
| Q |
216 |
accttttaatcaagttg----ttagtagttggatgcaataggcatacacaaaaggaaacaacaaataaaatgaatttcatgaaactt-aataatgcatat |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26748208 |
accttttaatcaagttgttaattagtagttggatgcaataggcatacacaaaaggaaacaacaaataaaatgaatttcatgaaacttaaataatgcatat |
26748307 |
T |
|
| Q |
311 |
tgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaatgacgacaagtttagagggagtatgaaaactgttgtgttgttctggaaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748308 |
tgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaatgacgacaagtttagagggagtatgaaaactgttgtgttgttctggaaaa |
26748407 |
T |
|
| Q |
411 |
caaatgttctttttgctgaaaagacagagttgttctgtttttgttcctattatgattgttgctattattaatactag |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748408 |
caaatgttctttttgctgaaaagacagagttgttctgtttttgttcctattatgattgttgctattattaatactag |
26748484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 27419941 - 27419823
Alignment:
| Q |
261 |
aaaaggaaacaacaaataaaatgaatttcatgaaacttaataatgcatattgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaa |
360 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
27419941 |
aaaacgaaacaacaagtaaaatgaatttcatgaaagttaataatgcatattgtttgaagtggggagatattgtgattga----aaatcagacaaaaagaa |
27419846 |
T |
|
| Q |
361 |
tgacgacaagtttagagggagta |
383 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
27419845 |
tgatgacaagtttagagggagta |
27419823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 67422 - 67540
Alignment:
| Q |
261 |
aaaaggaaacaacaaataaaatgaatttcatgaaacttaataatgcatattgttggaagtgatgagatattgtgattgaaactaaaagagacaaaaagaa |
360 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
67422 |
aaaacgaaacaacaagtaaaatgaatttcatgaaagttaataatgcatattgtttgaagtggggagatattgtgattga----aaatcagacaaaaagaa |
67517 |
T |
|
| Q |
361 |
tgacgacaagtttagagggagta |
383 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
67518 |
tgatgacaagtttagagggagta |
67540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 18684237 - 18684311
Alignment:
| Q |
282 |
tgaatttcatgaaacttaataatgcatattgttggaagtgatgagatattgtgattgaaactaaaagagacaaaa |
356 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||||| |||||||||| || |||| | ||||||| |||| |
|
|
| T |
18684237 |
tgaatttcatgaaagttagtaatgcatatcgttggaagtggcgagatattgttatagaaattgaaagagagaaaa |
18684311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 5088019 - 5087970
Alignment:
| Q |
16 |
tatagattttaaattcataggcaatctttttataaatggctacacatgta |
65 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
5088019 |
tatagatactaaattcagaggcaatctttttataaatggccatacatgta |
5087970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University