View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19810_low_4 (Length: 437)
Name: NF19810_low_4
Description: NF19810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19810_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 4687788 - 4687365
Alignment:
| Q |
1 |
tttatattgaaaatactttaatcacttttatactctacttgttttttaaggtgaaaaagagattccatgggaca--ggtttgaatcatttcttgttgttt |
98 |
Q |
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| T |
4687788 |
tttatattgaaaatactttaatcacttttatactctacttgttttttaaagtgaaaaagagattccatgggacacaggtttgaatcatttcttgtttttt |
4687689 |
T |
|
| Q |
99 |
ctgtcaacacaataagataaggttatatattgaagattaat-acaatgaaataggctagaaacacatattctaacattctcttttcaatgtttaattttt |
197 |
Q |
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| T |
4687688 |
ctgtcaacacaataagataaggttatatattgaagattaattataatgaaatgggctagaaacacatattcaaacattctcttttcaatgtttaattttt |
4687589 |
T |
|
| Q |
198 |
tactcggtgaaatttatatagctcttactgtgcgagtaattttcaaaatataaatatatttagtttgcctttacatataatgaat-tgtggatgcctctc |
296 |
Q |
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| T |
4687588 |
tactcggtgaaatttatatagctcttaccgtgcgagtaattttcaaaatataaatatatttagtttgcctttacatataatgaatgaatggatgcctctc |
4687489 |
T |
|
| Q |
297 |
gcgagtcctagttgtttaactgtgtttttgaccctatatgatgaagtctgaaattcgttagggtcggtctttgtcggtcaaatatcacgtattgacagct |
396 |
Q |
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| T |
4687488 |
gtgagtcctagttatttaattgtgtttttgatcctatatgatgaagtctgaaattcgttagggtcggcctttgtcggccaaatatcacattttgacagct |
4687389 |
T |
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| Q |
397 |
ctagttttgcattatgttgtttgt |
420 |
Q |
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|||||||||||||||||||||||| |
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| T |
4687388 |
ctagttttgcattatgttgtttgt |
4687365 |
T |
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