View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19810_low_7 (Length: 285)

Name: NF19810_low_7
Description: NF19810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19810_low_7
NF19810_low_7
[»] chr7 (15 HSPs)
chr7 (28-274)||(26180040-26180286)
chr7 (47-274)||(26121272-26121499)
chr7 (47-274)||(26129527-26129754)
chr7 (47-270)||(26156152-26156374)
chr7 (66-274)||(19102529-19102737)
chr7 (125-274)||(26243357-26243506)
chr7 (145-274)||(26278653-26278782)
chr7 (107-274)||(26192222-26192389)
chr7 (125-274)||(26251805-26251954)
chr7 (145-274)||(26298405-26298534)
chr7 (158-274)||(26204842-26204958)
chr7 (158-269)||(26224484-26224595)
chr7 (158-273)||(26260830-26260945)
chr7 (217-274)||(26302766-26302823)
chr7 (158-270)||(26208378-26208490)
[»] chr4 (1 HSPs)
chr4 (111-274)||(44904210-44904373)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 26180286 - 26180040
Alignment:
Q  28 taatagagacaaatactttgatgttgtttcatcttatcgaaagccttcatctgctacacctcctgaagcatcaatcatcactccttcatttgacttatct 127  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26180286 taatagagaaaaatactttgatgttgtttcatcttattgaaagccttcatctgctacacctcctgaagcatcaaacatcactccttcatttgacttatct 26180187  T
Q  128 aatctgctttcacaccaagtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagt 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26180186 aatctgctttcacaccaagtgccttagatttctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagt 26180087  T
Q  228 cctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  26180086 cctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 26180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 274
Target Start/End: Complemental strand, 26121499 - 26121272
Alignment:
Q  47 gatgttgtttcatcttatcgaaagccttcatctgctacacctcctgaagcatcaatcatcactccttcatttgacttatctaatctgctttcacaccaag 146  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  26121499 gatgttctttcatcttattgaaagccttcatcagatacacctcctgaagcatcaaacattactccttcatttgacttatctaatctgctttctcaccaag 26121400  T
Q  147 tgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcacca 246  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  26121399 tgctttagatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatgtccacgttcctctataatcctcttggcagcctcacca 26121300  T
Q  247 agtttctttgctctcatcctcatttctt 274  Q
    |||||||||||||||||| |||||||||    
T  26121299 agtttctttgctctcatcatcatttctt 26121272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 47 - 274
Target Start/End: Complemental strand, 26129754 - 26129527
Alignment:
Q  47 gatgttgtttcatcttatcgaaagccttcatctgctacacctcctgaagcatcaatcatcactccttcatttgacttatctaatctgctttcacaccaag 146  Q
    |||||| |||||||||||  ||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  26129754 gatgttctttcatcttattaaaagccttcatcaaatacacctcctgaagcatcaaacattactccttcatttgacttatctaatctgctttctcaccaag 26129655  T
Q  147 tgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcacca 246  Q
    ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  26129654 tgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggcagcctcacca 26129555  T
Q  247 agtttctttgctctcatcctcatttctt 274  Q
    || || ||||||||||||||||||||||    
T  26129554 agcttttttgctctcatcctcatttctt 26129527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 47 - 270
Target Start/End: Complemental strand, 26156374 - 26156152
Alignment:
Q  47 gatgttgtttcatcttatcgaaagccttcatctgctacacctcctgaagcatcaatcatcactccttcatttgacttatctaatctgctttcacaccaag 146  Q
    |||||||||||||||||| ||||| ||||||| | |||| ||||| ||||||||| ||  |||||||||||||||||||||||||  ||||| || ||||    
T  26156374 gatgttgtttcatcttattgaaagtcttcatcagatacatctcctaaagcatcaaccactactccttcatttgacttatctaatca-ctttctcatcaag 26156276  T
Q  147 tgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcacca 246  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26156275 tggtttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatcacca 26156176  T
Q  247 agtttctttgctctcatcctcatt 270  Q
    |||||||||||||||| |||||||    
T  26156175 agtttctttgctctcaccctcatt 26156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 19102529 - 19102737
Alignment:
Q  66 gaaagccttcatctgctacacctcctgaagcatcaatcatcactccttcatttgacttatctaatctgctttcacaccaagtgccttagatttcttcaat 165  Q
    |||||||||||||  |||||||| ||||| |||||| ||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  19102529 gaaagccttcatcaactacacctactgaaacatcaaacattactccttcatttgaattatctaatctgctttctcaccaagtgacttagatttcttcaat 19102628  T
Q  166 gatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgctctcatcc 265  Q
    |||||||| |||||||||||| ||||||||||||||| ||| | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  19102629 gatttcagctcatcaatcaacagaatcaagttgttgtgagagtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgctctcatcc 19102728  T
Q  266 tcatttctt 274  Q
    |||||||||    
T  19102729 tcatttctt 19102737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 26243506 - 26243357
Alignment:
Q  125 tctaatctgctttcacaccaagtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctat 224  Q
    |||||||||||||| || |||| |  |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26243506 tctaatctgctttctcatcaagcgttttagatttcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctat 26243407  T
Q  225 agtcctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26243406 agtccttttggcagcatcaccaagtttctttgctctcatcctcatttctt 26243357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 26278782 - 26278653
Alignment:
Q  145 agtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcac 244  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  26278782 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcac 26278683  T
Q  245 caagtttctttgctctcatcctcatttctt 274  Q
    ||||||||||||||||||||||||||||||    
T  26278682 caagtttctttgctctcatcctcatttctt 26278653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 26192389 - 26192222
Alignment:
Q  107 actccttcatttgacttatctaatctgctttcacaccaagtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaaga 206  Q
    |||||||||||| | || |||| ||||||    |||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||    
T  26192389 actccttcatttcaattctctagtctgctgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtatga 26192290  T
Q  207 atctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26192289 atgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 26192222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 26251954 - 26251805
Alignment:
Q  125 tctaatctgctttcacaccaagtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctat 224  Q
    |||||||||| ||  ||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26251954 tctaatctgcattttcaccaagcgctttatatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctat 26251855  T
Q  225 agtcctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
     ||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  26251854 cgtccttttggctgcatcgccaagtttctttgctctcatcctcatttctt 26251805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 26298534 - 26298405
Alignment:
Q  145 agtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcac 244  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  26298534 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgc 26298435  T
Q  245 caagtttctttgctctcatcctcatttctt 274  Q
     |||||||||||||||||||||||||||||    
T  26298434 taagtttctttgctctcatcctcatttctt 26298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 26204958 - 26204842
Alignment:
Q  158 tcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgc 257  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  26204958 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttcttggcagcatcaccaagcttctttgc 26204859  T
Q  258 tctcatcctcatttctt 274  Q
    |||||||||||||||||    
T  26204858 tctcatcctcatttctt 26204842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 26224595 - 26224484
Alignment:
Q  158 tcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgc 257  Q
    ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  26224595 tcttcaatgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctatagtcttctttgcagcatcaccaagcttctttgc 26224496  T
Q  258 tctcatcctcat 269  Q
    ||||||||||||    
T  26224495 tctcatcctcat 26224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 26260945 - 26260830
Alignment:
Q  158 tcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgc 257  Q
    ||||||||||||| || ||||| || || || ||||| |||||||||||   |||||| ||||||||  || |||| || ||||||| ||||||  ||||    
T  26260945 tcttcaatgatttaagctcatctataaattgcatcaaattgttgtaagaggttccaccctcctctatgctcttcttagctgcatcacaaagttttcttgc 26260846  T
Q  258 tctcatcctcatttct 273  Q
    |||| |||||||||||    
T  26260845 tctcctcctcatttct 26260830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 26302823 - 26302766
Alignment:
Q  217 tcctctatagtcctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
    ||||||||||||||||||| |||| ||||||| || || ||| || ||||||||||||    
T  26302823 tcctctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctt 26302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 26208490 - 26208378
Alignment:
Q  158 tcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcctcttggcagcatcaccaagtttctttgc 257  Q
    ||||||||||||| || ||||| || || || |||||||||||||||||   ||||   || |||||| || |||| ||||||| ||||||||| ||| |    
T  26208490 tcttcaatgattttaggtcatctattaattgcatcaagttgttgtaagaggttccattctcatctatactcttctttgcagcataaccaagtttttttac 26208391  T
Q  258 tctcatcctcatt 270  Q
     ||| ||||||||    
T  26208390 cctcctcctcatt 26208378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 44904373 - 44904210
Alignment:
Q  111 cttcatttgacttatctaatctgctttcacaccaagtgccttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatct 210  Q
    |||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| | |    
T  44904373 cttcatttcagttatctaatctgctttctcaccaagtgctttggatttcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgt 44904274  T
Q  211 ccaccttcctctatagtcctcttggcagcatcaccaagtttctttgctctcatcctcatttctt 274  Q
    |||||||||||||||||||||||||||||||| ||||  || ||||||||| ||||||||||||    
T  44904273 ccaccttcctctatagtcctcttggcagcatcgccaaacttttttgctctcgtcctcatttctt 44904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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