View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19810_low_8 (Length: 237)
Name: NF19810_low_8
Description: NF19810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19810_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35429824 - 35429604
Alignment:
| Q |
1 |
atattttcctattcacaaggacctcatttgaaccggataagtgcccctgcttatctcgagctcagttatcataagcagactatcacatatgcactgagtt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429824 |
atatttttctattcacaaggacctcatttgaaccggataagtgccgctgcttatctcgagctcagttatcataagcagactatcacatatgcactgagtc |
35429725 |
T |
|
| Q |
101 |
gttcctacttagatgaggttcgttggaatcgtataggtctttcacctatcttgaatgcagttgttccagaatgactgaaacacccctataacgaactata |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35429724 |
gttcctacttagatgaggctcgctggaatcgtataggtctttcacctatcttgaatgcggttgttccagaatgattgaaacacccctataacgaactata |
35429625 |
T |
|
| Q |
201 |
cattgtatgagggaatataac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35429624 |
cattgtatgagggaatataac |
35429604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University