View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19811_high_3 (Length: 240)
Name: NF19811_high_3
Description: NF19811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19811_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16083962 - 16084182
Alignment:
| Q |
1 |
ggttatgaacttctaagttctttgtctgtaattatgggtttgaagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16083962 |
ggttatgaacttctaagttctttgtctgtaattatgggtttggagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaact |
16084061 |
T |
|
| Q |
101 |
attaccctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgattcgaccaccattaccttacttttgcaagatgatgatgttcctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16084062 |
attaccctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgactcaaccaccattaccttacttttgcaagatgatgatgttcctgg |
16084161 |
T |
|
| Q |
201 |
gttagaaattcgacacaaagg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16084162 |
gttagaaattcgacacaaagg |
16084182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 22775919 - 22775705
Alignment:
| Q |
7 |
gaacttctaagttctttgtctgtaattatgggtttgaagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattacc |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| | || |||| ||||| || ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22775919 |
gaacttctaagttctttgtctgttattatggggttggaaaaacatgttcttgctggactgcataaagaagtacttcagggtttacgtgtgaactattacc |
22775820 |
T |
|
| Q |
107 |
ctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgattcgaccaccattaccttacttttgcaagatgatgatgttcctgggttaga |
206 |
Q |
| |
|
|||||||| || |||||| |||| || |||||||| ||||||| || || | ||||||||| |||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
22775819 |
ctccttgcgacacacctgagcaagtgttgggtttgagtccacactccgactcaagcaccattactttacttatgcaagatgatgatgtgcctggattaga |
22775720 |
T |
|
| Q |
207 |
aattcgacacaaagg |
221 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
22775719 |
aattcgacataaagg |
22775705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 22779074 - 22778872
Alignment:
| Q |
7 |
gaacttctaagttctttgtctgtaattatgggtttgaagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattacc |
106 |
Q |
| |
|
||||||||||||| | ||||| | || ||||| ||| |||| |||||||| | |||||| ||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
22779074 |
gaacttctaagttttctgtctattatcatggggttggagaaacatgctctcgctgaactgcataaagaattaattcaaggtttacgcgtgaactattacc |
22778975 |
T |
|
| Q |
107 |
ctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgattcgaccaccattaccttacttttgcaagatgatgatgttcctgggttaga |
206 |
Q |
| |
|
||||||||| || |||||| ||||||| |||||||| ||||||| ||| | |||||||||||||||||| | |||||||||||||| | ||| ||||| |
|
|
| T |
22778974 |
ctccttgcaacaaccctgagcaagtattgggtttgagtccacactctgacacaaccaccattaccttacttattcaagatgatgatgtgcttggattaga |
22778875 |
T |
|
| Q |
207 |
aat |
209 |
Q |
| |
|
||| |
|
|
| T |
22778874 |
aat |
22778872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 22766402 - 22766188
Alignment:
| Q |
7 |
gaacttctaagttctttgtctgtaattatgggtttgaagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattacc |
106 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||| |||| ||||||||| ||| | ||||||||| |||||||| ||| |||||| |||||||||| |
|
|
| T |
22766402 |
gaacttctaagttctttgtctcttattatggggttggagaaacatgctctttttgggatgcataaagaattacttcaatgttcacgtgtaaactattacc |
22766303 |
T |
|
| Q |
107 |
ctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgattcgaccaccattaccttacttttgcaagatgatgatgttcctgggttaga |
206 |
Q |
| |
|
|| | |||| || ||||| ||||||| |||||||| |||||| ||| | |||||||||| | ||| |||||||||||||||| ||||||||||| |
|
|
| T |
22766302 |
ctacatgcaacacacctgatcaagtattgggtttgagctcacactctgacacaggcaccattaccattcttatgcaagatgatgatgtgcctgggttaga |
22766203 |
T |
|
| Q |
207 |
aattcgacacaaagg |
221 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
22766202 |
aattcgaaacaaagg |
22766188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 22783521 - 22783307
Alignment:
| Q |
7 |
gaacttctaagttctttgtctgtaattatgggtttgaagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattacc |
106 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| || |||||||||||||||||| | | ||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
22783521 |
gaacttttaagttctttgtctattattatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaactattacc |
22783422 |
T |
|
| Q |
107 |
ctccttgcagcatgcctgagaaagtattaggtttgagaccacactgtgattcgaccaccattaccttacttttgcaagatgatgatgttcctgggttaga |
206 |
Q |
| |
|
||||||||| || |||||| ||||||||||| |||| | || | ||| | |||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
22783421 |
ctccttgcaacacacctgagcaagtattaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgggttaga |
22783322 |
T |
|
| Q |
207 |
aattcgacacaaagg |
221 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
22783321 |
aattcgaaacaaagg |
22783307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 23277948 - 23278115
Alignment:
| Q |
54 |
tcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattaccctccttgcagcatgcctgagaaagtattaggtttgagaccacactgt |
153 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | || || ||| ||||| | || |||| ||||||| | |
|
|
| T |
23277948 |
tcttcttggactacataaagaagtacttcaaggtttacgtgtgaactattatcctccttgtaacacaccagagcaagtaattgggttgactccacactct |
23278047 |
T |
|
| Q |
154 |
gattcgaccaccattaccttacttttgcaagatgatgatgttcctgggttagaaattcgacacaaagg |
221 |
Q |
| |
|
||| | | ||| |||| || || ||||||| |||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
23278048 |
gatgcaagcacagttacaatagttatgcaagacgatgatgtaactgggttagaagttcgatacaaagg |
23278115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 22770745 - 22770638
Alignment:
| Q |
49 |
catgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattaccctccttgcagcatgcctgagaaagtattaggtttgagaccac |
148 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||| | || || ||||||||| ||||| |||| || | |
|
|
| T |
22770745 |
catggtcttcttgatctacatagagaagtacatcaaggtttccgtgtgaactattaccctccttgtaacacacccgagaaagtactaggtgtgagtccgc |
22770646 |
T |
|
| Q |
149 |
actgtgat |
156 |
Q |
| |
|
||| |||| |
|
|
| T |
22770645 |
actctgat |
22770638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University