View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19811_low_1 (Length: 362)
Name: NF19811_low_1
Description: NF19811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19811_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 40304905 - 40304547
Alignment:
| Q |
1 |
catctttttaccatatgcgannnnnnnggtagaatttggtaattggttacacaatggttaggctttgatactgctaatctgggtaccatttcatatcatc |
100 |
Q |
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| T |
40304905 |
catctttttaccatatgcgattttttttgtagaatttggtaattggttacacaatggttaggctttgatattgctaatctgggtaccatttcatatcatc |
40304806 |
T |
|
| Q |
101 |
atattgattatgtcttatatataggcagcttctctaagcagacttgattgagtttgaacattatttggctatgtagtgcttgggttatttggaaataaag |
200 |
Q |
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| T |
40304805 |
atattgattatttctaatatatagacggcttctctaagcagacttgattgagtttgaacattatttggctatgtagtgcttgagttatttggaaataaag |
40304706 |
T |
|
| Q |
201 |
aagcagacacattttttagcatatggaggaaaatcttttaacctcatatgnnnnnnnttaaactctaaacgtattggtggttgaaagcgagatacattac |
300 |
Q |
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| T |
40304705 |
aagcagacacattttttagcatatggagg-aaatcttttaacctcatatg-aaaaaattaaactctaaacgtattggtggttgaaaatgagatacattac |
40304608 |
T |
|
| Q |
301 |
tttcgttttttattatcagtattggaggattaat-atctccggtatttagcctatgcttct |
360 |
Q |
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| T |
40304607 |
tttcgttttttattatcagtattggaggattaatcatctccgttgtttagcttatgtttct |
40304547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 289
Target Start/End: Complemental strand, 5196420 - 5196389
Alignment:
| Q |
258 |
ttaaactctaaacgtattggtggttgaaagcg |
289 |
Q |
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| T |
5196420 |
ttaaactctaaacgtattggtggttgaaagcg |
5196389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 17227715 - 17227669
Alignment:
| Q |
258 |
ttaaactctaaacgtattggtggttgaaagcgagatacattactttc |
304 |
Q |
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|||||||| |||||||||||||||||||||||| | |||||||||| |
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| T |
17227715 |
ttaaactccaaacgtattggtggttgaaagcgaacttcattactttc |
17227669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 22298699 - 22298667
Alignment:
| Q |
258 |
ttaaactctaaacgtattggtggttgaaagcga |
290 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
22298699 |
ttaaactccaaacgtattggtggttgaaagcga |
22298667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 33937210 - 33937242
Alignment:
| Q |
258 |
ttaaactctaaacgtattggtggttgaaagcga |
290 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
33937210 |
ttaaactccaaacgtattggtggttgaaagcga |
33937242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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