View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19811_low_4 (Length: 237)
Name: NF19811_low_4
Description: NF19811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19811_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18066750 - 18066526
Alignment:
| Q |
1 |
ttagataatcatcttcttcaagaaatgaagttctcacnnnnnnnnaatcaagtaaacatggtttcctgttttata------ccgtttttaatcaagtnnn |
94 |
Q |
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| T |
18066750 |
ttagataatcatcttcttcaataaatgaagttctcacttttttt-aatcaagtaaacatggtttcctattttatatttataccgtttttaatcaagtaaa |
18066652 |
T |
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| Q |
95 |
nnnntgatagttaattttgtaagaggaaacaataatgttttatgaatatagtcaaatgatttctaatttgagacaaactgttttttgcaacgtgacttat |
194 |
Q |
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| T |
18066651 |
aaatt-atagttaattttgtaagaggaaacaataatgttttatgaatatagtcaaatgatttctaattttaaacaaattattttttgcaacgtgacttat |
18066553 |
T |
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| Q |
195 |
aacttacgacgaatagagtaatgcaaa |
221 |
Q |
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| T |
18066552 |
aacttacgacaaatagagtaatgcaaa |
18066526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 18130025 - 18129845
Alignment:
| Q |
1 |
ttagataatcatcttcttcaagaaatgaagttctcacnnnnnnnnaatcaagtaaacatggtttcctgttttata------ccgtttttaatcaagtnnn |
94 |
Q |
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| T |
18130025 |
ttagataatcatcttcttcaataaatgaagttctcacttttttt-aatcaagtaaacatggtttcctattttatatttataccgtttttaatcaagtaaa |
18129927 |
T |
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| Q |
95 |
nnnntgatagttaattttgtaagaggaaacaataatgttttatgaatatagtcaaatgatttctaatttgagacaaactgtttttt |
180 |
Q |
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| T |
18129926 |
aaa-tgatagttaattttgtaagaggaaacaat---gttttatgaatatagtcaaatgatttctaattttaaacaaattatttttt |
18129845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 18103301 - 18103198
Alignment:
| Q |
117 |
gaggaaacaataatgttttatgaatatagtcaaatgatttctaatttgagacaaactgttttttgcaacgtgacttataacttacgacgaatagagtaat |
216 |
Q |
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||||||| |||||||||| || | |||| ||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18103301 |
gaggaaaaaataatgtttcatta-tatactcaaatgatttttaagttgagacaaattattttttgcaacgtgacttataacttacgacgaatcgagtaat |
18103203 |
T |
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| Q |
217 |
gcaaa |
221 |
Q |
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||||| |
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| T |
18103202 |
gcaaa |
18103198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18105023 - 18104987
Alignment:
| Q |
1 |
ttagataatcatcttcttcaagaaatgaagttctcac |
37 |
Q |
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| T |
18105023 |
ttagataatcatcttcttcaagaaatgaagttctcac |
18104987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18111166 - 18111130
Alignment:
| Q |
1 |
ttagataatcatcttcttcaagaaatgaagttctcac |
37 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
18111166 |
ttagataatcatcttcttcaataaatgaagttctcac |
18111130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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