View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19812_low_1 (Length: 396)
Name: NF19812_low_1
Description: NF19812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19812_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 48 - 381
Target Start/End: Complemental strand, 13118797 - 13118464
Alignment:
| Q |
48 |
ttaatatgcatcttattctaagttattataatttaaactttgcattgttgtcgttctctacttttgacttctcattattgtcgaactttatggttgccaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13118797 |
ttaatatgcatcttattctaagttattataatttaaactttgcattgttgtcgttctctacttttgacttctcattattgtcgaactttatggttgccaa |
13118698 |
T |
|
| Q |
148 |
tactattagtttaacattgttagtgatgcataatgggtttgaattattcccaggttatagtgcataggattaattattggccaaaagcactaaataataa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13118697 |
tactattagtttaacattgttagtgatgcataatgggtttgaattattcccaggttatagtgcataggattaattattggccaaaagcactaaataataa |
13118598 |
T |
|
| Q |
248 |
tataagtacaccgattattgtttgtcatttcttctggatactatggactataattaatgttgttgcgcctacatggaaatatgatggcgttccctctaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13118597 |
tataagtacaccgattattgtttgtcatttcttctggatactatggactataattaatgttgttgcgcctacatggaaatatgatggcgttccctctaag |
13118498 |
T |
|
| Q |
348 |
ggaaacacaacatttacatgagaaaagtttttga |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13118497 |
ggaaacacaacatttacatgagaaaagtttttga |
13118464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 13119244 - 13119206
Alignment:
| Q |
15 |
acatcactttataatcagaatggatagcaattattaata |
53 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13119244 |
acatcactttataatcagaattgatagcaattattaata |
13119206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University